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RAFL09-72-L18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88299)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL09-72-L18 - 5 prime EST 
GATTCTGAAT AAGATCAAGA ATTTACAGTA TTTGAAAAAA TACAAAATGG 
CGAAAATCTA CCGGAAGTTG ACAGGCTACG GTGGTGAAGG AGGGCGTGAA 
TGGGACGATG ATGTATATGA GGGTGTAAGA AAAGTGTATG TAGGACAAGA 
TATCAATCGT ATCACTTACG TCAAATTCGA GTATGTGAAG GAAGACGGCC 
AAGTCGTAAC AACTGAATAT GGGAAAATCA TTCAACAACC CAAAGAGTTT 
GTACTTCAAT ATCCGGACGA ACATATCATA GCGGTGGAAG GAAACTATCG 
CGGAGTGGCT CTATGTGCCA CAGAGGTGAT CACAAACCTC GTCTTCAAGA 
CCTCAAAGGG TAGAAAGTCA CCACTGTTTG GTCCAAACTT GCTTGGAATT 
ACGACCGGTA CAAAGTTCGT TATTGAGGAT GGAGGAAAGA AGATCGTAGG 
GTTTCATGGA CGGTCGGGTA ATGCTCTCGA CGCGCTTGGA GTTTACTTTG 
TACATGGCTC TCTAACAACG TCTTCCGCCT GTTTACAAGC TGGATGCCCA 
AGGTGGTACA GACCGGGCGT GT

Gene models with high sequence identity

  1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
    E-value: 0; Score: 99.65

3 prime EST [+] show sequence

Nucleotide sequence: RAFL09-72-L18 - 3 prime EST 
GATTTATTGA ATAGTTGAAG AGAGCACACC AATTCTTATT GGACATATTT 
GACAGAAACA GTAAGTTACA AACACATCAA AAGTAGTAGA GTAAACACAC 
CAATCCTTAT TGAATGTTTT CATTTAGTCG ACATGGCACT GGCTGGTTTT 
ACTTATATAA TAAAAGGTTT TTCACTTGGT GTTGGTAATG GGCACGACAG 
TGACTCGATG CTGTGAACAA CATCACTAGC TTGTCCGTGG AATCGACGAT 
CTTGTGGCCT TTCTCTCCAA GCGAGAACTT CTCACCCGAA TCCATTCCGA 
ATGGAGTTGA CTCCCTTTTG TCGTCTTAAA CTGAAGAAGA TAATCATTGG 
TGTCTCGACT CCGAAAATCT TATCGTAATA GCCATCTATG GCCGTGAGAT 
ATTC

Gene models with high sequence identity

  1. AT2G39330.1 [+] show detail - jacalin-related lectin 23
    E-value: 0; Score: 99.02

AT2G39330.1

Model type
Protein coding
Short Description
jacalin-related lectin 23
Computational Description
jacalin-related lectin 23 (JAL23); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 22 (TAIR:AT2G39310.3); Has 1977 Blast hits to 736 proteins in 44 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 4; Plants - 1953; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-72-L18 introduced

  • F01339 - Specific phenotypes were NOT observed.
  • F02145 - Specific phenotypes were NOT observed.
  • F03028 - Specific phenotypes were NOT observed.
  • F05442 - seed::increased size / seed::increased length
  • F08009 - Specific phenotypes were NOT observed.
  • F11401 - Specific phenotypes were NOT observed.
  • F11945 - seed::increased length
  • F14724 - Specific phenotypes were NOT observed.
  • F14934 - Specific phenotypes were NOT observed.
  • F16541 - Specific phenotypes were NOT observed.
  • F18529 - Specific phenotypes were NOT observed.
  • F18907 - Specific phenotypes were NOT observed.
  • F18932 - Specific phenotypes were NOT observed.
  • F19803 - Specific phenotypes were NOT observed.
  • F20929 - Specific phenotypes were NOT observed.
  • F21628 - seed::increased size / seed::increased length
  • F24042 - Specific phenotypes were NOT observed.
  • F24612 - Specific phenotypes were NOT observed.
  • F25710 - Specific phenotypes were NOT observed.
  • F28638 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

20 mutant lines found