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  3. RAFL09-72-P15

RAFL09-72-P15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17819)

full reading [+] show sequence

Nucleotide sequence: RAFL09-72-P15 - full reading 
GATGGGATTG CTGCAAACGG TTCCTTATAT GGCAGTGAAT TTAAATCTGA 
TGATGCAATG GAAACAGATA CTACAGTTTT AAGAGACTTC GAAGGTGCAA 
CAGCACTGTC TGCTAATGCT TCATTGGCTG AGCGTGCTAT TGAGCCTGCA 
CTTGTCATGT TTGAGGTTCA TGTGCCACCA TCGTGCAGTC TTGATGGTGT 
ACACTCACAA CATTTCTTTG GGACTGGCAT CATTATATAT CATTCTTCTA 
ACATGGGGCT TGCTGTGGTG GACAAAAACA CAGTTGCGAT TTCTGCATCT 
GATGTTATGT TGTCCTTTGC TGCTTTTCCA GTCGAGATTC CTGGAGAGGT 
AGTATTTCTT CATCCCGTTC ACAACTATGC TCTGATTGCG TATAATCCAT 
CAGCAATGGA TCCTGCCAGT GCTTCAGTCA TTCGTGCAGC TGAGCTACTA 
CCTGAACCTG CACTCCAACG TGGAGATTCA GTCTATCTTG TCGGATTGAG 
TAGGAACCTT CAAGCTACAT CAAGAAAATC TATTGTAACC AATCCATGTG 
CAGCGTTAAA CATTGGTTCT GCTGATTCTC CCCGTTACAG AGCTACTAAT 
ATGGAAGTAA TTGAGCTTGA TACAGATTTT GGTAGCTCAT TTTCAGGGGC 
GCTGACTGAT GAGCAGGGAA GAATTCGGGC TATTTGGGGA AGTTTTTCGA 
CTCAGGTTAA ATATAGTTCC ACTTCTTCAG AAGACCACCA GTTTGTCAGA 
GGTATCCCAG TATATGCAAT CAGCCAAGTC CTTGAAAAAA TCATAACCGG 
TGGAAATGGA CCAGCTCTTC TCATAAATGG TGTCAAAAGG CCAATGCCAC 
TTGTTCGGAT TTTGGAAGTT GAATTGTATC CTACTTTGCT TTCAAAAGCC 
CGGAGTTTTG GTCTGAGTGA TGAATGGATC CAAGTCCTAG TCAAGAAGGG 
TCCTGTTAGA CGTCAAGTTC TGCGTGTTAA AGGTTGCCTG GCAGGATCAA 
AAGCTGAAAA CCTTCTTGAA CAAGGCGATA TGGTTCTGGC AGTCAATAAG 
ATGCCAGTTA CATGCTTCAA TGACATAGAA GCTGCTTGCC AAACATTGGA 
TAAGGGTAGT TACAGCGATG AAAATCTCAA TCTAACAATC CTTAGACAGG 
GCCAAGAACT GGAGCTCGTA GTTGGAACTG ATAAGAGAGA TGGGAATGGA 
ACGACAAGAG TGATAAATTG GTGCGGATGC GTTGTTCAGG ATCCTCATCC 
TGCGGTTCGT GCTCTTGGAT TTCTTCCTGA GGAAGGTCAT GGTGTCTATG 
TCACAAGATG GTGTCACGGG AGTCCCGCTC ACCGATATGG CCTCTACGCG 
CTTCAATGGA TCGTGGAAGT TAATGGGAAG AAGACTCCTG ACCTAAACGC 
ATTCGCAGAT GCTACCAAGG AGCTAGAACA CGGGCAGTTT GTGCGTATTA 
GGACTGTTCA TCTAAACGGC AAGCCACGAG TATTGACTCT GAAACAAGAT 
CTCCATTACT GGCCGACTTG GGAATTGAGG TTCGACCCAG AGACTGCTCT 
TTGGCGGAGA AATATATTGA AAGCCTTGCA GTAAAAGCCA TTTGGTGTTT 
CTCTGAAAGT CTCTTATGTC TCTCATTGCT CCAACTTTGT TGTATTTCTA 
TCATTCTTCT ACTCAAATTC TTCATTAATT CATCATACTA AAAGACCTGT 
CACTACAGTT TACAGAAAAA CTGAAGGATT TTACATCCAG TAAAAATGTT 
CAAACCAAAA A

Gene models with high sequence identity

  1. AT3G03380.1 [+] show detail - DegP protease 7
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMSmart PDZ/DHR/GLGF 0.229999998797964
HMMSmart PDZ/DHR/GLGF 0.420000001910726
superfamily PDZ/DHR/GLGF 0.0000003
superfamily PDZ/DHR/GLGF 0.0000000000068
superfamily Serine/cysteine peptidase, trypsin-like 1.5e-17
Gene3D G3DSA:2.30.42.10 0.000001

See the detailed result >

AT3G03380.1

Model type
Protein coding
Short Description
DegP protease 7
Curator Summary
Encodes a putative DegP protease.
Computational Description
DegP protease 7 (DegP7); CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03370.1); Has 8327 Blast hits to 7895 proteins in 2064 species: Archae - 65; Bacteria - 6254; Metazoa - 235; Fungi - 503; Plants - 137; Viruses - 0; Other Eukaryotes - 1133 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-72-P15 introduced

  • F01737 - Specific phenotypes were NOT observed.
  • F09628 - Specific phenotypes were NOT observed.
  • F14717 - seed::increased width
  • F16318 - Specific phenotypes were NOT observed.
  • F19247 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::present in fewer numbers in organism / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism
  • F28114 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found