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  3. RAFL09-73-B09

RAFL09-73-B09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17821)

full reading [+] show sequence

Nucleotide sequence: RAFL09-73-B09 - full reading 
GATTTGTGCC TACTCATTTC CTCCAAACGT CAAACATAGC AGCAGCCATG 
GCTGCCACCA ACACAATCCT CGCATTCTCA TCTCCTTCTC GTCTTCTCAT 
TCCTCCTTCC TCCAATCCTT CAACTCTCCG TTCCTCTTTC CGCGGCGTCT 
CTCTCAACAA CAACAATCTC CACCGTCTCC AATCTGTTTC CTTCGCCGTT 
AAAGCTCCGT CGAAAGCGTT GACAGTTGTT TCCGCGGCGA AGAAGGCTGT 
TGCAGTGCTT AAAGGTACTT CTGATGTCGA AGGAGTTGTT ACTTTGACCC 
AAGATGACTC AGGTCCTACA ACTGTGAATG TTCGTATCAC TGGTCTCACT 
CCAGGGCCTC ATGGATTTCA TCTCCATGAG TTTGGTGATA CAACTAATGG 
ATGTATCTCA ACAGGACCAC ATTTCAACCC TAACAACATG ACACACGGAG 
CTCCAGAAGA TGAGTGCCGT CATGCGGGTG ACCTGGGAAA CATAAATGCC 
AATGCCGATG GCGTGGCAGA AACAACAATA GTGGACAATC AGATTCCTCT 
GACTGGTCCT AATTCTGTTG TTGGAAGAGC CTTTGTGGTT CACGAGCTTA 
AGGATGACCT CGGAAAGGGT GGCCATGAGC TTAGTCTGAC CACTGGAAAC 
GCAGGCGGGA GATTGGCATG TGGTGTGATT GGCTTGACGC CGCTCTAAGT 
CAGAGGCTAA GCAAGTACTC TTATGTCTAC TGTGTTGATC TTGTCTGTTT 
GAACAGATGT AAGAATCTTA GCAAATAATG TTTGGCTTAA TAAACTTTGA 
TGTTTATGTT CATTGCATCA ATTTTTCTCT TTTTGAATTT GTGACAGTGA 
TGTGTTTACT TTTGATACAA CTTTGTGTTT GATCGTTTAA GTACATTTTG 
GTTTATTTAG CATAAAAAAA A

Gene models with high sequence identity

  1. AT2G28190.1 [+] show detail - copper/zinc superoxide dismutase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Superoxide dismutase, copper/zinc binding 4.2e-49
FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
FPrintScan Superoxide dismutase, copper/zinc binding 9.4e-46
HMMPanther SUPEROXIDE DISMUTASE [CU-ZN] 2.3e-75
HMMPanther Superoxide dismutase, copper/zinc binding 2.3e-75
PatternScan Superoxide dismutase, copper/zinc, binding site 0
PatternScan Superoxide dismutase, copper/zinc, binding site 0
superfamily Superoxide dismutase, copper/zinc binding 1.3e-58
Gene3D Superoxide dismutase, copper/zinc binding 2.5e-56

See the detailed result >

AT2G28190.1

Model type
Protein coding
Short Description
copper/zinc superoxide dismutase 2
Curator Summary
Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.
Computational Description
copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-73-B09 introduced

  • F00709 - Specific phenotypes were NOT observed.
  • F02638 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found