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  3. RAFL09-73-P16

RAFL09-73-P16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08736)

full reading [+] show sequence

Nucleotide sequence: RAFL09-73-P16 - full reading 
AGCTAAAGAA GATCAAAAAC TTTTCTTAGG GCTTTGGAGA TTCGAGCTCG 
AGTATTCATA CAAGTCTGGT GATATCCACG AAAATCAGAA GACGAGATGC 
TAGGAGAATG TGGGAGGCTA TCAAAGACAG AGAAACCGGT CGAATTCGTT 
CCAATTCCTT CGCCAATCGA TTCAAATCCC GCCGGATTTT GTCTCTCCAA 
CTCTCTAATC GAAAAGACTT TGTTTCTCCT CATCGTGGCT CCGTTAACTC 
CCTTCAGGTT GATTTGACGG AGGGGAGATA TCTTCTCTCT GGAGCAGCAG 
ATGGTTCAGC TGCTGTATTT GATGTTCAAC GGGCCACTGA TTACGAGGCA 
AGTGGTCTAA TTGCCAAGCA CAAGTGTATA TTTACTGTCG ACAAGCAACA 
TGAAAATGGA CATAAATATG CCATATCCTC TGCCATTTGG TATCCCATTG 
ACACTGGGCT CTTCATTACA GGTTCTTTTG ATCATTACTT AAAAGTCTGG 
GATACCAATA CTGCTCAGGC GGTTGTGGAT TTTAAAATGC CTGGAAAGGT 
TTATAGAACT GCCATGTCTT CTATGGCAAT GTCTCACACG TTAATTGCTG 
CTGGAACTGA AGATGTCCAG GTTCGCCTCT GTGATATAGC TTCTGGGGCA 
TTCTCTCACA CATTATCGGG TCACCGTGAT GGCGTTATGT CAGTGGAATG 
GTCTACTTCC AGCGAGTGGG TTTTGTATAC TGGGGGTTGT GATGGTGCAA 
TACGTTTCTG GGACATTAGA CGGGCTGGTT GTTTCCGTGT TCTAGATCAA 
TCACAGACAC AACTTGGGTT CCGACCACCA ATTTTAAAGC GAACTGCGGT 
TGGCAGTAAG CTTTCTTCAG TTGCAAAATC TTCTTTGGGG GGCCAAAATA 
GGTTGAAGAC ACTGCAGAGT AAACAAACTG GAAGCCAAAG TGTAAAGGGA 
TCATCTAGCG CTAAAGCTTC AGTGGAAAAG TCTCGACAGA AGAGAATTCA 
CCCTGGAATG TTATCTACTC TAGATCGTGC TACGGCTCAT TATGGTGCTG 
TTACTGGCTT AAAGGCAACT AACGATGGGA TGTATCTTCT TAGTGCTGGG 
TCGGATTCAA GAATAAGATT GTGGGATATT GAATCTGGAC GCAACACCCT 
GGTGAACTTT GAAACTGGAC GCATCCAGAC TAACAAAGGA ATCCAATTAG 
ATACAAGCGA TGATCCAGCT CTGGTATTTG TTCCATGCAT GAAGACTGTG 
AAGGCTTTTG GCATGTGGTC GGGTAGAACA ACACTGATGC TTCGTGGACA 
CTACGAAAGC GTGAACACTT GCTGCTTTAA TTCCAATGAT CAGGAACTAT 
ACACAAGTGG CTCAGATAGA CAAATACTTG TGTGGTCACC AGGCGGAACA 
GTGGAAGATG AAATGGTGCA AGATGAAGTA GCCGAAGATA AAGACAATTG 
GAGCGACTGA GAAAACAAGT TTCGGGCAGT CTTCTTTCCC AATCTGTGAA 
TTTCCATGTG CGTTGTTCTG AGTATAGTTT TCACAAACTC GTATTACTAT 
AGTCGGGTTT TGATTGTTTA TAAAGTAAAA CTGAAATATT TGTCAGTTAA 
TTAGAATTTA GTTCATACTA CTAAAATGAA GATTAAACTC GTTCCGAGTC 
AATGCGAACC GAATAAACAA CGATCGACTG TAAGACCAAA ACGAATCTCT 
TTATTCGGCG AAGACCATAA ATTTGTAACT AAAGATAACT AAAAAAAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT1G27840.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan WD40 repeat 2 11.11
ProfileScan WD40 repeat 2 13.182
ProfileScan WD40 repeat 2 14.886
ProfileScan WD40 repeat 2 11.377
ProfileScan WD40-repeat-containing domain 24.178
superfamily WD40 repeat-like-containing domain 8e-52
HMMPanther COCKAYNE SYNDROME WD-REPEAT PROTEIN CSA (DNA 2.6e-237
HMMPanther WD40 REPEAT FAMILY 2.6e-237
HMMPfam WD40 repeat, subgroup 0.073
HMMPfam WD40 repeat, subgroup 0.00017
HMMPfam WD40 repeat, subgroup 4.6e-07
HMMPfam WD40 repeat, subgroup 2.6e-05
HMMPfam WD40 repeat, subgroup 3.4e-05
FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
FPrintScan G-protein beta WD-40 repeat, region 2.9e-06
Gene3D WD40/YVTN repeat-like-containing domain 7.7e-49
HMMSmart WD40 repeat 0.11
HMMSmart WD40 repeat 0.00016
HMMSmart WD40 repeat 1.2e-07
HMMSmart WD40 repeat 5.5e-05
HMMSmart WD40 repeat 1e-05
PatternScan WD40 repeat, conserved site 0
PatternScan WD40 repeat, conserved site 0

See the detailed result >

AT1G27840.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Curator Summary
Encodes a DDB1a interacting protein ATCSA-1 required for UV-B tolerance and genomic integrity.
Computational Description
ATCSA-1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G19750.1); Has 28727 Blast hits to 16574 proteins in 608 species: Archae - 26; Bacteria - 4830; Metazoa - 10091; Fungi - 6796; Plants - 3577; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-73-P16 introduced

  • F03651 - seed::increased size
  • F11930 - Specific phenotypes were NOT observed.
  • F14605 - seed::increased size / seed::increased length
  • F20915 - rosette leaf::increased size / cauline leaf::increased size / stem::increased thickness

Mutant lines with disrupted or induced

5 mutant lines found