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RAFL09-74-G13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08743)

full reading [+] show sequence

Nucleotide sequence: RAFL09-74-G13 - full reading
ATTCTCTCTC TAACTTCTCT ATGTTAAAAT TCCGAAAGCT CGATTCAGAA 
ATCTAGAAGC TTCCTCGAGG GCCCTCGCGT AGAAAGTCGA ACTCAAATTC
CCTGGAGACA AAGAAGAGGA AGATGAGCTC ATGGAACTAC GTTGTTACGG
CTCACAAACC GACCAGTGTC ACTCACTCGT GCGTTGGCAA CTTCACAAGT
CCTCAAGAGC TCAATCTCAT TGTCGCGAAA TGTACTCGAA TCGAGATCCA
TTTGCTTACC CCACAAGGAC TTCAGCCTAT GTTGGACGTT CCTATATATG
GAAGAATCGC TACTCTGGAG TTGTTCCGAC CCCATGGCGA AGCGCAAGAC
TTTTTGTTCA TTGCAACTGA GAGATACAAA TTCTGTGTTC TTCAATGGGA
TCCTGAGTCC TCTGAGCTTA TTACAAGAGC AATGGGGGAT GTTTCTGATC
GTATAGGCCG GCCAACAGAC AATGGTCAGA TTGGTATAAT TGATCCAGAT
TGTAGATTAA TTGGACTCCA TCTGTATGAC GGCTTGTTCA AGGTTATTCC
ATTTGATAAT AAGGGACAGC TCAAGGAAGC TTTTAATATC AGGCTTGAGG
AATTGCAGGT TCTGGATATC AAGTTTCTGT TTGGATGTGC AAAGCCCACT
ATTGCAGTAC TATATCAGGA CAACAAAGAT GCTCGTCATG TCAAAACATA
TGAAGTCTCT CTTAAAGATA AGGATTTTGT CGAGGGTCCA TGGTCTCAGA
ACAGTCTCGA CAATGGTGCT GACTTGCTGA TTCCTGTACC ACCACCGCTC
TGTGGTGTCC TTATTATTGG TGAAGAAACA ATTGTCTATT GCAGTGCTAG
TGCATTCAAA GCAATACCAA TAAGACCTTC CATCACTAAA GCATATGGAA
GAGTTGATGT TGATGGCTCT AGATATCTTC TTGGTGACCA TGCTGGAATG
ATTCATCTGC TTGTTATAAC GCACGAGAAA GAAAAGGTCA CTGGCCTAAA
AATTGAGCTT TTGGGTGAAA CATCTATTGC ATCGACTATA TCGTACCTTG
ACAATGCCGT TGTCTTTGTC GGCTCAAGCT ATGGTGATTC ACAGCTAGTA
AAGCTGAATC TACACCCTGA TGCAAAAGGC TCATATGTAG AAGTCTTGGA
AAGGTATATC AACTTGGGGC CTATTGTCGA CTTTTGTGTA GTTGACCTCG
AGAGACAGGG GCAAGGTCAG GTTGTAACTT GTTCTGGAGC ATTTAAGGAT
GGTTCCCTCC GCGTAGTTCG CAATGGAATA GGAATCAATG AACAGGCGTC
TGTGGAACTT CAAGGTATCA AAGGAATGTG GTCGTTGAAA TCTTCAATTG
ATGAAGCCTT CGATACATTT CTTGTTGTTA GCTTTATCAG TGAAACTCGC
ATATTAGCCA TGAATCTTGA GGATGAACTG GAAGAAACAG AGATTGAGGG
CTTCTTGTCT CAAGTGCAGA CGTTATTTTG CCATGATGCT GTGTACAATC
AACTTGTACA GGTTACCTCA AATTCTGTTA GACTAGTCAG TTCTACAACT
AGAGAATTGC GGGACGAGTG GCATGCCCCA GCTGGATTCA CTGTTAATGT
TGCAACTGCA AATGCCAGCC AGGTTCTTTT GGCGACTGGA GGTGGGCATT
TGGTTTATCT AGAAATTGGA GATGGGAAAT TGACGGAAGT GCAACATGCC
CTTTTGGAGT ACGAGTTTTC CTGTCTTGAT ATAAACCCTA TCGGTGACAA
TCCTAATTAC AGTCAGCTAG CTGCGGTTGG GATGTGGACA GATATAAGTG
TGAGGATCTT TTCGCTGCCA GAATTGACTC TTATTACAAA AGAGCAACTT
GGAGGGGAAA TAATTCCCCG ATCTGTTCTT CTTTGTGCAT TCGAAGGGAT
ATCTTACTTG CTATGTGCTC TTGGAGATGG CCATCTTTTG AACTTCCAGA
TGGATACAAC TACCGGACAA TTAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT4G05420.1 [+] show detail - damaged DNA binding protein 1A
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPanther DNA REPAIR PROTEIN XP-E 0
HMMPanther DNA REPAIR/RNA PROCESSING CPSF FAMILY 0

See the detailed result >

AT4G05420.1

Model type
Protein coding
Short Description
damaged DNA binding protein 1A
Curator Summary
Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.
Computational Description
damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 1490 Blast hits to 1182 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 604; Fungi - 374; Plants - 231; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-74-G13 introduced

  • F12547 - cauline leaf::decreased width / stem::dark green / cauline leaf::epinastic / whole plant::decreased height / stem::abnormal / fruit::abnormal / rosette leaf::decreased size / rosette leaf::upturned / stem::decreased thickness / cauline leaf::decreased width / fruit::abnormal / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

6 mutant lines found