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Full-length cDNAs
RAFL09-75-K21

RAFL09-75-K21

RIKEN Arabidopsis Full-length cDNAs

CCCTTTTAGA AAGAAGACTC TCTTTTAAGT TTGGGTGTTA ATTCTAGGGT 
TTCCATTAAC AATGGCAGAT TCTTCTTCTG CTTCTTACAT TCACATGGTG 
CAGCACATGA TAGAGAAATG TTTGATCTTC CATATGAGCA AAGAAGAGTG 
TGTGGAAGCT CTCTCTAAGC ATGCAAACAT CACTCCTGTC ATCACCTCTA 
CTGGTTTTAA TTCCTCTCTC TCTCTCTCCT CTTTTTTAAT ACTTTTTACC 
TTTCCGTAAT CCTTATAAAC ACACAAACAT ATCTGTACCT ATGTACTCTC 
TAACGGGATT AATTATATGT ATAAATTATG GAGCTATCAT CATATTATGA 
TACCATCATT TAGAATTTGA TCATGTAATA TGTACTTAAT TAGCTACAGA 
TAGGATCTAG CGTGATGGAT CGATCTTCAA TATTTCTATT CATATAAGTG 
CTCATGCATA ATCAAATTAA TGATTATATA CACTGACTTG ACTACCTGGC 
GACTAGAACT TATACATATA CAAAAAAAGC CAAAGAAAAT ATAAAAATCC 
TTGCAACATA TATATCCGGC CTATATATTT TGTTATCATA ATATTAATGA 
ATTGGAACAA AATAAATGAC AGTGTGGAAG GAGCTGGAGA AAGAGAACAA 
GGAATTCTTC AAGGCGTATG AGGAGAGGCA AAGCAAACAA GAGCAAATGT 
CGGAGGAAGA GACAAACCAG ATGATCCAGA AGATTATCTC GGATTCATCT 
AAAGAATCCG ACGACTGATC GCGATGTTCG ATCGTTAGAT TTCGAAAACC 
TTATAGTTTA TATATATGAA TCTCATGAAA ACGATTTATC CCTGACGCAT 
GCATGTTTAT AAGTAAATCG TTTTTTCATC TTAGCATCGG TCCAACAAGC 
AAGACAGCAA AAAAAGGAGT GATGACACTC TTTTTGGTAC GTTATACGTA 
CGTGGTCCAC ATAATATTGC CTCTGTTTAA TTATATATAA TGAAACGGAC 
GCTAGCTCAT ACATGGATCG ATGGTGTGGT GTTTTAATTG AATGTATCGT 
GTGTATATAT TTTCAAATAA ACTATTTATT TCGGGTTAAA AAAAAAA

Gene models with high sequence identity

AT3G55240.1 [+] show detail - Plant protein 1589 of unknown function
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Conserved hypothetical protein CHP01589, plant	0.0000659999999999999
HMMTigr	Conserved hypothetical protein CHP01589, plant	0.000000043
HMMPfam	Conserved hypothetical protein CHP01589, plant	3.1e-17

See the detailed result >

AT3G55240.1

Model type: Protein coding
Short Description: Plant protein 1589 of unknown function
Curator Summary: Overexpression leads to PEL (Pseudo-Etiolation in Light) phenotype.
Computational Description: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: developmental process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT3G28990.1); Has 220 Blast hits to 220 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-75-K21 introduced

F12429 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / stem::decreased thickness / whole plant::decreased height / fruit::decreased length / stem::present in greater numbers in organism / rosette leaf::epinastic / rosette leaf::abnormal / rosette leaf::abnormal / stem::decreased thickness / fruit::decreased length / fruit::decreased thickness
F25145 - rosette leaf::desaturated green / stem::desaturated green / cauline leaf::desaturated green / fruit::abnormal / rosette leaf::desaturated green / rosette leaf::decreased size / stem::desaturated green / cauline leaf::desaturated green / fruit::abnormal

Mutant lines with disrupted or induced

3 mutant lines found