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  3. RAFL09-76-C09

RAFL09-76-C09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17838)

full reading [+] show sequence

Nucleotide sequence: RAFL09-76-C09 - full reading 
CCTGGGAGAA GAAAAAGTTG AAAAAATTGT AAAGTCAGTC TCTCCGACTC 
TTCCTTCCTT CCGTGTTCAC CATTGCTACA CGTTCTCCAC GAACTTTCCG 
ATGCCCAGTC GTCGGAGACA TAGCTACACC GTCGGATCTC CTGCAACCAC 
ATCTTCCAAT TACAGTAACA CTACTTTCAC CGATCGTTCC TTCCCGACAA 
CCCCTGCCCG TACATCCACC GACACAACCA CCTCCATCGC TCGTCGCATC 
TCCGGTATCT TCATCAACTG CTTCACTCCT CCCGATTCCG TTTCCTCCAA 
CTACATCGAC AATTCAAAGT CCTCTTCCGA CAATAATATC CGTAGTAGAC 
GTAGCTCAAC AGGAAGTAGT AGTGTACAGA GGAGTTATGG AAATGCAAAC 
GAAACAGAGC ATACAAGATT CACCTTCGAT GAAATCTACG ACGCGACCAA 
GAACTTCTCT CCGTCCTTTA GGATCGGACA AGGCGGTTTT GGCACTGTTT 
ACAAGGTCAA ACTCAGAGAT GGCAAAACCT TTGCTGTGAA ACGTGCCAAA 
AAGAGTATGC ATGACGACCG TCAAGGTGCA GATGCAGAGT TTATGAGTGA 
GATTCAGACA TTAGCTCAAG TTACTCATTT GAGTTTGGTT AAATACTATG 
GATTTGTTGT TCATAACGAC GAGAAGATTC TCGTTGTGGA GTATGTAGCC 
AATGGAACTC TTAGAGATCA CTTGGATTGT AAGGAAGGAA AGACTCTCGA 
CATGGCGACT CGGTTAGATA TCGCAACCGA TGTAGCTCAT GCCATAACCT 
ATCTTCACAT GTATACACAG CCACCTATCA TCCACAGAGA TATCAAATCT 
TCAAACATTC TCCTCACTGA GAATTACAGA GCCAAGGTTG CTGATTTCGG 
GTTTGCAAGA TTAGCTCCAG ATACTGATTC AGGAGCCACG CATGTGTCAA 
CACAAGTCAA AGGAACCGCT GGTTACTTAG ACCCAGAGTA CTTAACAACG 
TATCAACTCA CAGAGAAAAG TGACGTCTAC TCTTTTGGTG TACTGCTCGT 
CGAGCTTCTC ACAGGTCGGC GTCCCATCGA GCTTAGCAGA GGACAAAAAG 
AACGCATCAC CATTAGATGG GCGATCAAGA AGTTCACGAG TGGAGATACG 
ATATCGGTAT TGGACCCGAA GCTAGAACAG AATTCAGCGA ACAACTTAGC 
ATTAGAGAAG GTATTGGAGA TGGCGTTTCA ATGTCTAGCT CCTCATAGAC 
GTTCGAGACC AAGCATGAAA AAATGCAGTG AGATTTTGTG GGGAATTCGT 
AAAGATTACA GAGAGTTGCT CAACACAAGT CTTTGATGAT ATTATTCTCT 
ACGCTTATAT AATATGGTTT TGAATACACA ATTATATATT ATTTGTTTGA 
ATATTAATTT GTCATACACG ATGCATTCTT GTACGAGAAT TGTTGATTTG 
TAATTGATTT TGAAATTTGT AGTATTATAT TAACGCAAAA A

Gene models with high sequence identity

  1. AT4G00330.1 [+] show detail - calmodulin-binding receptor-like cytoplasmic kinase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 1.1e-78
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMSmart Serine/threonine-protein kinase domain 1e-39
HMMSmart Tyrosine-protein kinase, catalytic domain 4.8e-24
HMMPanther WALL-ASSOCIATED KINASE 1.6e-177
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.6e-177
Gene3D no description 2.5e-18
Gene3D no description 2.3e-48
HMMPfam Serine/threonine-protein kinase-like domain 4.1e-49
ProfileScan Protein kinase, catalytic domain 38.746

See the detailed result >

AT4G00330.1

Model type
Protein coding
Short Description
calmodulin-binding receptor-like cytoplasmic kinase 2
Curator Summary
high overall homology to CRCK1
Computational Description
calmodulin-binding receptor-like cytoplasmic kinase 2 (CRCK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: calmodulin-binding receptor-like cytoplasmic kinase 1 (TAIR:AT5G58940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-76-C09 introduced

  • F01318 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

17 mutant lines found