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  3. RAFL09-78-H06

RAFL09-78-H06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08793)

full reading [+] show sequence

Nucleotide sequence: RAFL09-78-H06 - full reading 
AATGGAAATA CACTCCGATG ACTACTTCTT CCTTCCTCCT CCCTGCTTCT 
CCTCCCTCAG CCGCCTTTCT CCGGCGGCGC TTCTTCCGCC ACTCCTGGCT 
TTCCTCTAAG ATCCACCACC GTCTTCCCCA AGTTATGAAT GATTCCACGA 
GGACTGAAGT ATCCATTGAT AAATCAGAAG TAGACAAGCT TGTTGACAAG 
ATTGATTTTG GGGAATTATG CAACGATTTT GAGTGCACAA GTAGTCCGCA 
GGTGGAATCC ACAGCTAGAC AACTTGTTCG CGACATTCTT GAAATCAGAG 
AAGGAAATCG TGCCTTTGCA TGCTATGCAG TTTCCGTTAA ATATAAGGAT 
CCGGTTAGAA GTTTTACAGG TCGTGAGAAG TACAAAAGAC CAATGTGGAT 
AACTAGTGGA TTAGAGAATC CTACCGTGAC GGTACAAGAG ATGGTAATGT 
TATCGACCAG CGTCTTGCGA ATTAAATGGA CAGTGAAAGG AAAACCAAAA 
TCTATTCTTG CTGCTGTAAG TGGAGATTTG ATAGTAAAAG TCAAATCTGA 
ATTTACTCTT AACCAGATTA GTGGGCAAGT GTTTGAGCAT GAAGAGTCTT 
GGGACTTATC TTCATCATCC CCTATTGCTC AAGCCTATTT CTGGACATCC 
CGCCGCCTCT TTGCTGCTTC TGAATCCGCA AAAGATGTCG CCGATGTCAC 
AAAAGACTTG ACCGCCAATT TGACAACTCG AAAAGAGGAC ACAGATATAT 
ATCGCGATCC AACCGATCCA AATAAGTTTT TCCAAAGAGA CAACAGCTTT 
GAGAGAGATG TGTATCAAAT TGCACTGTTT CTAGCCATTG TCTATTTTGT 
TGTACAGTTC TTGAAGAACA CAATCTAGTT ACCTTCTCTC CCATCCTCTA 
TAACAGATAT GTAAATGCCT ATATATTGTT GTATATGATC TGTAAAAAAA 
AACTGAACAA GAAAAGAGAT GTGTTTGTTT GTGTTGGAAG AAAGACT

Gene models with high sequence identity

  1. AT1G65230.1 [+] show detail - Uncharacterized conserved protein (DUF2358)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G65230.1

Model type
Protein coding
Short Description
Uncharacterized conserved protein (DUF2358)
Computational Description
Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); Has 45 Blast hits to 45 proteins in 18 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-78-H06 introduced

  • F11542 - seed::increased size / seed::increased length
  • F15212 - Specific phenotypes were NOT observed.
  • F19334 - Specific phenotypes were NOT observed.
  • F21217 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found