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  3. RAFL09-79-C06

RAFL09-79-C06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08811)

full reading [+] show sequence

Nucleotide sequence: RAFL09-79-C06 - full reading 
GAGAGAAATC CATGGAGACG ATGACGATGA AGGTTGAAAC CATTAGTAAA 
GAAATCATAA AGCCATCTTC GCCAACTCCA AATAATCTCC AAACTCTCCA 
ACTCTCAATT TACGATCACA TCCTTCCTCC AGTTTACACA GTAGCCTTTC 
TCTTCTACAC CAAAAATGAT TTGATCTCTC AAGAACACAC TTCCCACAAA 
CTCAAGACTT CTCTGTCTGA AACCCTGACC AAGTTCTACC CTCTTGCCGG 
AAGAATCACC GGAGTAACCG TCGATTGTAC CGATGAAGGA GCTATCTTTG 
TCGATGCTCG TGTCAATAAC TGTCCTCTCA CTGAATTTCT CAAGTGCCCT 
GATTTCGACG CCCTCCAACA GTTGCTTCCT CTAGATGTTG TAGACAACCC 
ATACGTGGCT GCTGCCACGT GGCCTTTGCT GCTCGTGAAG GCAACTTACT 
TCGGATGCGG AGGCATGGCC ATAGGAATCT GCATCACTCA CAAAATCGCG 
GACGCAGCCT CCATCTCGAC TTTCATTCGG TCCTGGGCCG CCACGGCTCG 
AGGAGAGAAC GATGCCGCTG CGATGGAAAG TCCTGTATTT GCTGGTGCGA 
ATTTCTACCC ACCAGCCAAT GAGGCTTTTA AGCTACCTGC GGACGAACAA 
GCCGGCAAGA GAAGCAGCAT TACAAAGAGA TTTGTGTTCG AAGCTTCTAA 
GGTGGAAGAT CTCAGGACCA AAGCCGCTAG TGAAGAAACA GTAGACCAAC 
CTACGCGGGT GGAGAGCGTT ACTGCGCTCA TCTGGAAATG CTTCGTCGCA 
TCCTCAAAGA CAACTACTTG TGATCACAAA GTGCTGGTCC AGCTTGCTAA 
CTTGCGGTCC AAGATACCTT CCCTTCTGCA AGAAAGCTCT ATCGGAAATC 
TCATGTTCTC TTCTGTGGTC TTGAGTATTG GTCGAGGAGG GGAAGTTAAA 
ATTGAAGAGG CCGTTAGAGA CTTACGAAAA AAAAAGGAGG AGTTAGGAAC 
TGTGATCCTA GACGAGGGTG GGTCATCTGA CTCATCTTCC ATGATCGGTT 
CGAAACTAGC AAATCTGATG CTCACCAACT ATTCTCGGTT GAGCTATGAG 
ACTCATGAAC CCTATACCGT GAGTAGCTGG TGTAAGCTAC CTCTTTACGA 
GGCTAGCTTT GGATGGGATT CTCCGGTTTG GGTTGTTGGG AATGTGTCCC 
CCGTGTTAGG CAACTTGGCC ATGTTGATAG ATTCCAAGGA CGGACAAGGA 
ATTGAAGCGT TCGTCACACT GCCTGAAGAG AACATGTCGT CCTTCGAGCA 
GAACCCAGAG TTGCTCGCCT TTGCTACCAT GAACCCTAGT GTCTTGGTTT 
AAATCCTGTA CTGAAATTTG TTGTTTCCTC AATAAAGATT TGGATACACC 
GAATCTATAT ATATCTTCAA GATGTAATGC AAGAAATGTA AACTACTGGA 
ATATCATTTA TGTTTTAACT TTTCC

Gene models with high sequence identity

  1. AT4G15390.1 [+] show detail - HXXXD-type acyl-transferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transferase 1.1e-140
Gene3D no description 2e-50
Gene3D no description 2.2e-45

See the detailed result >

AT4G15390.1

Model type
Protein coding
Short Description
HXXXD-type acyl-transferase family protein
Computational Description
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT3G30280.1); Has 2282 Blast hits to 2273 proteins in 132 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 35; Plants - 2239; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-79-C06 introduced

  • F07838 - Specific phenotypes were NOT observed.
  • F26249 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found