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  3. RAFL09-79-F05

RAFL09-79-F05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08815)

full reading [+] show sequence

Nucleotide sequence: RAFL09-79-F05 - full reading 
TCGCTGCTTT TACTACAAGA GGAAACAGAG ATGAGCAGAG ACGGCGGAGA 
TGTAATTGAG ACGGCGGTTA AGAGTCTTGG CAAAGGTTTC GATTTGACGG 
CGGATTTCCG GTTGAAATAC TGTAAAGACG GCGACGGCTC CGCCGGAGAT 
GACAGATTGG TTGTGCTTGA CCAAACTCAA AACAGAGAAT TGCATATTCC 
TGGTTTCGGT GTTTTTCAAA ATGTCTCCGC CGATATAAAC TGCGACAAAG 
GAGAACGAAC TCGATTCCGT TCCGACATTC TTGACTTCAA CAAGATGTCG 
GAGTATTTTA ACCAGAGGTC GTCGGTGACC GGAAAAATAC CGTCGGGAAA 
TTTCAACGCG ACGTTCGGGT TTCAAAGCGG GTCATGGGCG ACAGACGCCG 
CAAACGTTAA ATCTTTAGGT CTTGACGCTT CTGTTGTAAC GCTATTTAAT 
CTCCACATAC ACAATCCTAA TCGTTTGCGG CTCACTGACC GCGTCCGAAA 
CGCAGTTCCT TCATCTTGGG ACCCACAATT ATTGGCTAGG TTTATAGAGA 
GGTATGGAAC ACACGTAATA ACAGGAGTGA GCGTAGGAGG ACAAGACGTG 
GTAGTTGTGA GGCAAGACAA GTCATCTGAT CTCGACAACG ACCTCCTCCG 
TCACCATCTC TATGATCTTG GCGACCAATT GTTTACCGGC TCTTGCCTTC 
TCTCTACACG CCGGCTCAAT AAGGCCTATC ACCACTCACA CTCTCAACCC 
AAGTTTCCGG AGGCTTTCAA CGTCTTTGAT GACAAACAAA CGGTTGCTTT 
CAACAATTTT TCGATAAATT CTCAAAATGG AATAACGGTT ATATGCGCCA 
AAAGAGGAGG CGACGGAAGA GCAAAGAGCC ATAGCGAATG GCTAATAACA 
GTCCCGGACA AGCCTGACGC GATCAATTTC AACTTTATTC CGATCACATC 
ACTCCTTAAA GACGTCCCTG GCTCTGGTCT TCTCTCTCAC GCCATGTCTC 
TCTACCTAAG ATACAAGCCG CCGTTAATGG ACCTACAATA CTTCTTGGAC 
TTCTCTGGGC CAAGAGCATG GGCTCCGGTC CATAACGACC TTCCATTTGG 
CGCGGCACCA AATATGGCTT CGGCCTATCC AGCTCTTCAC ATCAACTTCA 
TGGGTCCCAA ACTATACGTT AATACCACTC CCGTGACTAG CGAGAAGAAT 
CCAGTAACCG GAATGCGATT TTTCCTTGAA GGCAAGAAAT GCAATAGGCT 
GGCTATACAC CTACAACACC TAGACAACAC AAGAACTACG GTTGGGGAAA 
AGATCACTGA CGAACATATA TGGAGAGGCT CCGATCAAAT CACCGACAAT 
GATCGCTACT TCGAACCTTT AAACGGTAAG AAATTCTCAC ACGTGTGTAC 
GGTTCCAGTG AAGTACGACC CAAACTGGAT CAAAACAACA AGCAATCACA 
AGTCCCAAAA CGACGTAGCT TTCATCGTCA CCGGAGCACA ACTCGAAGTG 
AAAAAACACG GCTCAAAATC CGTTCTCCAT CTCCGACTCC GTTACACTAA 
AGTCTCTGAT CATTACGTCG TTCAGAATAG TTGGGTTCAT GGACCAATTG 
GGACTTCTCA GAAATCGGGA ATCTTCTCTT CCATGAGCAT GCCGTTGACT 
AGTGGGAGTG TTCATCATAA TATGATCCAA AAAGACAAAA ACGAGGTCGT 
TTTGGATTCA GGTGTCTTCC CTGGTGGACC TCCTGTGCCG GCGAATAACA 
AGATAGTGAA ATTCGTCGAT CTTTCGCAGT TATGTCGAGG ACCTCAACAT 
AGTCCTGGTC ATTGGTTAGT CACTGGAGTG AGGCTTTACT TGGACAAGGG 
CAAACTTTGC TTACACGTCA AGTTTGCTCT GCTACATCGC CAACGTCTTC 
TTGTCTCTTC TTGAAGAAAA TATAACATTA TTTTTTTATA TACAAGTACG 
TTTCTTTTTT TGTTTTCCTC CAAAATTGCG ACATACAAAG GATGATTTCT 
TGATTTTGGA GTGTGTGAAT ATATAGAGCT GTGTATGTGC TTTAATGGGA 
TTGGCCCATT CAGAGAAATT GTTTATGTAC ATACATATGT TGAGAGGTCG 
AACATAGAAC TCTTAGTGGT AGCT

Gene models with high sequence identity

  1. AT1G14780.1 [+] show detail - MAC/Perforin domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Membrane attack complex component/perforin (MACPF) domain, metazoa 8.4e-09
HMMPfam Membrane attack complex component/perforin (MACPF) domain 4.2e-28
ProfileScan Membrane attack complex component/perforin (MACPF) domain 22.972

See the detailed result >

AT1G14780.1

Model type
Protein coding
Short Description
MAC/Perforin domain-containing protein
Computational Description
MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-79-F05 introduced

  • F16015 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found