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  3. RAFL09-79-G10

RAFL09-79-G10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08818)

full reading [+] show sequence

Nucleotide sequence: RAFL09-79-G10 - full reading 
CAAATCACAG ATCACACTTA CCAGATCACA AGACAAACAC AAACTAATAG 
TTTCGTGTGA CACAAGTAAA GAGTTTCGTG AGATAGAAGC AACACCAAAA 
GATGCTTGAA ACTGGAGCCA TATGGGGAAT AACCGGCACG ACGGTGACGA 
GCTTTATGTT CTTCTGGGCG ATTTACAAAC AATACGTCCC TGCCCATTTC 
CGAGCCTATG TGGAGAGATA CTTCCACAAG ATGATTGGAT GGATCTCTTA 
CTACGTTGAC ATCAAATTCA CCGAGTACAC AGATGAAGGT CTGAAGAGAA 
GCCAAGCCTA CGACTCCATA CGCAACTACT TAGCGTCGAA ATCAACGGCT 
CTTGCTAAAA GACTAAAGGC CAACGAAACG AAAAACAGCA AATCTTTGGT 
GTTTAGTATG GATGATCATG AGGAAATTGA AGATGAGTTC GAAGGTGTGA 
AGGTGAAGTG GTATTCGAAT GTGAAAGTGA TTCAGCCTCA GTCTAATTAT 
GGTCAACGCA GCTCAGAGGA GAGAAGGCAC TTTACTCTTA GTTTCCATAG 
GCGACACCGA GGTATGATCA TTGAGACTTA TCTTGATCAT GTTTTGAGAG 
AAGGGAAAGC TATTGGATTG ATGAACAGAG AGAGGAAGCT TTACACTAAT 
AACTCAAGTC AAGAATGGTA TCCTTGGAGG TCAGGAAAGT GGAGCAACGT 
TCCTTTTCAC CATCCGGCGA CGTTTGAGAC TTTGGCTATG GATCCAGAGA 
AGAAAGAAGG GATTAAGAAG GATTTGATAA AGTTTAGCAA AGGGAAAGAT 
TATTACAAGA AGGTTGGGAA GCCATGGAAG CGCGGTTATC TCTTGTTTGG 
CCCGCCCGGG ACAGGGAAAT CGACGATGAT AGCTGCAATA GCGAATTTCT 
TGGACTATGA TGTGTATGAT CTTGAGCTAA CGACGGTGAA GGATAACTCA 
GAGCTGAAGA AGTTGTTGTT GGATACAACT AGTAAGTCTA TCATTGTGAT 
TGAAGATATT GATTGCTCGC TTGATCTTAC GGGGCAGCGA AAGAAGAAAA 
AAGAGGAAGA TGAAGAGGAG GATGGAGAGG AGAAGAAGGA AGGTGAGAAG 
AAGCCCAAGG TAGATGATAA GCAGAGCAAG GTTACTTTGT CAGGTTTATT 
AAACTCCATT GATGGGTTAT GGTCAGCTTG TAGTGGTGAG AAGATCATAG 
TGTTCACAAC TAATTTTGTG GATAAGCTTG ATCCAGCATT GATACGTAGA 
GGAAGAATGG ACAACCACAT TGAGATGTCT TATTGCAAGT TTGAAGCATT 
CAAGGTTTTG GCTAAGAACT ACTTGGAGAT TGAAACACAC GACTTGTATG 
GAGAAATCGA AAGAAAGCTC GAAGAAACCG ATATGTCCCC CGCGGATGTT 
GCGGAGACTT TGATGCCGAA ATCTGACGAA GAAGATGCAG ATATTTGCAT 
CAAGCGTTTG GTCAAGACTT TGGAGGAAGA GAAGGAGAAA GCAAGGAAGT 
TGGCTGAGGA AGAAGAGAAG AAGAAAGCAG AGAAGGAAGC AAAGAAGATG 
AAGAAAGCAG AGGAAGCAGA GGAGAAGAAG AAGAAGACAG AGGAAGATGA 
GAAGAAGGAG AAAGTGAAGG CCAAGGAGGA AAACGGCAAC GTTTCTCAAC 
AAAATGGCAA CTCAATTGAT TTGAACAAGA AAAGTGACTC ATGATGAATT 
TTAGTTTATT GTATAAGGAT GTAATTTGGC AATTATTCTT CTCTCCTCTT 
ATCATATGCT TTTAAAGAAT TTGTATTTAC TATCTATAGA TTTCATCATT 
GTGTTCCAT

Gene models with high sequence identity

  1. AT3G28510.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam ATPase, AAA-type, core 1.2e-14
Gene3D no description 1.1e-30
HMMPanther AAA-TYPE ATPASE-RELATED 9.2e-279
HMMPanther BCS1 AAA-TYPE ATPASE 9.2e-279
superfamily P-loop containing nucleoside triphosphate hyd 2.1e-42
Coil coiled-coil 0
HMMSmart ATPase, AAA+ type, core 4.1e-09

See the detailed result >

AT3G28510.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-79-G10 introduced

  • F08150 - seed::increased size / seed::increased length
  • F19944 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found