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  3. RAFL09-79-N20

RAFL09-79-N20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08826)

full reading [+] show sequence

Nucleotide sequence: RAFL09-79-N20 - full reading 
AGGAAAGACT CCGTGGCTCG ATCCTAGTCT TGGCGATCGC CTCTACCCTT 
TTTGACTCTA TTCTTCTTCT TCTTCATTCA TTTCCCCTCT TATTCATTGC 
CTTTAGGGTT TCTTACACGA TATGAGCTAA ATACGATTTT GATTTCACCC 
TAAGCTTTCT TCTATTGCTT CTCGTCGTTG CAGGGTTTTC TTAAATGGAA 
ACGCCCGGCG CCAGTCATGA TTCATTTAGG GGTTCTCCTC GTAGAAACTC 
CATCCTCTCT GCTTCTAACA TCATCCAGGC CCCTATTTCT ACCTTGTTAG 
AGTATTCGGG TCTCTTTCGA GCTAGGCCAA GTCCTAGTCA TGAGGCTGAG 
ACGCTTGTTA GTGATGATTC TTCAGGACTC TCCAATGGGG AGGTTGCCAT 
TAGGATCATT GGCAACACCG AGCAGGATGC TGAAACTGAT ACCAATGCTC 
TGAGGGAACC CGGACACTCT GAACTCTTGG GTTCTTCTGC TACTCAGGTT 
GATCCCATGG GAGGTGCTTC AGAAGGTGCC TCTCAGGCTG CTCCAGGTGA 
TCCTGCTGCT GGAGACGCCG CTTCCCGGGA TTCGCCTTAC CAAAGATATG 
ATATTCAGCA GGCTGCACGC TGGATTGAGC AAATTCTTCC CTTTTCTTTG 
CTTCTGTTGG TTGTTTTTAT CCGCCAGCAT TTGCAGGGGT TCTTTGTCGC 
CATTTGGATT GCTGCTGTCA TGTTCAAGTC AAATGATATT CTCAAGAAGC 
AAACAGCTTT GAAGGGTGAG AGGCATATCT CGGCATTAAT TGGAATCTCT 
GTAGCATTTA CGGCCCATGT TGTTGGTGTT TATTGGTGGT TTCGGAAGGA 
TGACCTCTTG TATCCCTTAA TCATGCTGCC TCCAAAGTCC ATACCACCTT 
TCTGGCATGC CATTTTTATC ATAGTGGTGA ATGATACACT TGTCCGGCAG 
GCCTCAATGA TTTTCAAGTG TTTTTTGTTG ATGTACTACA AAAACAGTAG 
GGGTCGGAAT TATCGTAAAC AGGGTCAATT GCTAACTTTG GTTGAATATT 
TCATGCTTCT GTATCGCTCT TTACTGCCTA CCCCTGTATG GTACCGTTTC 
TTTTTGAACA AGGATTATGG AAGCCTCTTC TCCTCTCTTA TGACGGGATT 
GTATCTTACA TTCAAGCTCA CTTCAGTAGT TGAGAAGGTT CAATCCTTCT 
TTACGGCATT GAAGGCTTTG TCACGTAAAG AGGTGCACTA CGGATCATAT 
GCAACTACAG AGCAGGTAAA TGCAGCAGGC GACCTGTGTG CCATCTGCCA 
GGAGAAGATG CACACCCCAA TTCTTCTTCG CTGCAAACAC ATGTTTTGCG 
AAGATTGCGT TTCAGAGTGG TTTGAGAGAG AGAGGACGTG TCCTTTGTGC 
AGGGCCTTGG TCAAACCAGC AGATCTGAAA TCATTCGGTG ATGGATCCAC 
CAGCCTCTTC TTCCAGATTT TCTGATTAAA ACACATATAC AAGACTGCAA 
AGTAAAAAAG ACCCTCTAGA CTCACTTGCT CACTCGATAG TTTTCTTAGA 
GAGTATTTCT ATACAATGCC ATTCAAGCTG TGAAAGAAAC CACTGATGCC 
TTGGAAGATG TTCATACTAT GTCATTTGTT AATATGAATG AAATCGCCTT 
TTAT

Gene models with high sequence identity

  1. AT5G01960.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Zinc finger, C3HC4 RING-type 0.00067
ProfileScan Zinc finger, RING-type 0
superfamily SSF57850 5.8e-17
HMMPanther PTHR15860 0
PatternScan Zinc finger, RING-type, conserved site 0
HMMSmart Zinc finger, RING-type 1.19999985703101e-07
Gene3D Znf_RING/FYVE/PHD 1.80000149287192e-11

See the detailed result >

AT5G01960.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-79-N20 introduced

  • F13417 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found