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  3. RAFL09-80-B19

RAFL09-80-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09918)

full reading [+] show sequence

Nucleotide sequence: RAFL09-80-B19 - full reading 
AAAGAAGAAA GAAGAAGAAT AAAAGACAAG GCTTGAACGT CCGGTGAAAG 
AAAGAATTCA GCTTTCCGCA CTAACCACTT CTGAATCCTA ACCAACAAGC 
TTCTCCATTT CGTTTTTCGC GTCTCGATTC CAAATTCCAC TTAAGACGGC 
GGATTTTCTC ACCGGGAAAT TGGTTTTAGA TGGATAGGAC TGAGGAAATC 
GAAGAATCCC CCGCCGGACC TTCTTCCGGA TCCGCGAAAT TGAAGCTCGG 
AAACAGAGCA GATCCTTTCC TTGTTGTTTG TAGATGCTTC AGCCTCGTTA 
CCTCTCTCAT CGCCATTCTC TGTGTTGTCG TTAACGTTCT CGCTGCCGTT 
CGCTCCTTCC GTGACAGCCA CGATCTCTTC GATGGAATAT TCCGGTGTTA 
TGCTGTGGTG ATTGCTTGTT TTGTTGTTCT CGTTGAGACT GAATGGGGTT 
TCATTCTCAA ATTTTCCAAG GTTCTTGAAT ACTGGGCTGG TAGAGGAATG 
CTTCAAATTT TGTAAGTACA TCTATACAGC TTAGTAACCT TCTTTTGTAC 
CTCTTGTGTT GGAATGGATC GTGTTGTTCT TTTATGATGT GTTTTTTGAG 
TGCTGCTTCA GCTAATTCCA GGCCAGGTAC TCAAAAATGA GACCATTCCT 
TGGTTGCTGT ATGATTTTAT GTTTTATGTA TATATCTTTA CTTTGTTCAT 
TTCAGTGTTG CTGTGATGAC AAGAGCTTTC CCTGACTATA TGACTCAAAA 
GAAGGATCTC CTGCTTCTAC AGAACATCGC AAGCTACTTG CTTCTTGCTT 
GTGGTGTTAT CTATGTCATT TCTGTACGCT ATCACCATTC ATCCTATTAT 
ATCACATCTG CTTATTCCCT CTCTGCTCTC GCTTATTGTT GAATCTTTTC 
GTATTAGTTT GTGCCTTGTG GTTGCATCTT GCTTATAAGA ATGCATTTCA 
CTTGAAAACG ATTCTTGGTT TGTTGTAAGA ACTCATGTTG ACACTTTGTC 
CCCAGACCTT TAGGATCACT TGGATAACTC CCAACTCTGA ACAATAGATG 
CTTGATGTGG TGGTTAGCGA ATCTGTAGGG CTATTTCTAA CTTGAAAAAT 
GAGCTTCTTG GGCAATCACT TCCTTTGTTT TTCAATATCT GAGTTCCCGT 
TTATGTTTTC ACTGTCAATC TTTGATCGTT GTCTGAACTT CAGGGAGTTC 
TCTGCATCGG CTTTCTGAAG CGTGCTCGAC AGCAAAAGGA AGTTTCAAGA 
GAACAAGCAG TCAAGGATCT TGAGGAGATA GCCCGACGCA AGGAAGAGTT 
GGAACAATTG CTCCTGGAGC ATCAGAGTAG AGACGAAGAC GTGTGAATGT 
GAATGGACGA CGACATCAGT TTCTTTTTGT ATTAAAGCAT TGTGTGAGCT 
CTCGGTTTTC ATCCTCCCAC TTGGATAATA ACAGCAGATT CTTTTGTTTT 
TTGTCTGTTG AAAAACAAAG CTTTGATACT GGTCGTATAA GAGACGAGCA 
CTATTGAATA TAAAATTTGA CATGAT

Gene models with high sequence identity

  1. AT4G33625.2 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: pl...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Golgi apparatus membrane protein TVP15 1.6e-05
Coil coiled-coil 0

See the detailed result >

AT4G33625.2

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-80-B19 introduced

  • F05601 - Specific phenotypes were NOT observed.
  • F19731 - rosette leaf::dark green / stem::abnormal / stem::present in fewer numbers in organism
  • F20930 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found