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  3. RAFL09-80-D13

RAFL09-80-D13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17851)

full reading [+] show sequence

Nucleotide sequence: RAFL09-80-D13 - full reading 
GCTCTCTCTC TATCATCATC ATCATCACTT TCTCTATCTA TCTCTCTTCT 
TAAAGCGGCC ATTGGTGCTC TCCAAGTTCC ATCTCAAGCT TTTCTTCTTG 
TTTTGTTGTT CTCTTAATTG AAAAACAAGA TCTTGAACTA AAAAATGGAA 
ACTGAAGACG ATTTGTGCAA CACCAATTGG GGAAGCTCTT CTTCGAAATC 
GCGAGAGCCG GGTTCATCAG ACTGTGGGAA TTCGACATTC GCAGGTTTTA 
CGTCCCAGCA GAAGTGGGAA GATGCTTCAA TCTTGGATTA TGAGATGGGT 
GTGGAGCCTG GATTGCAAGA GAGCATTCAA GCAAATGTTG ATTTCTTACA 
AGGTGTTAGG GCTCAAGCGT GGGATCCAAG GACGATGTTG AGTAACCTTT 
CTTTTATGGA GCAGAAGATT CACCAGCTGC AGGATCTTGT TCATCTTCTT 
GTTGGTCGTG GTGGGCAGCT TCAAGGTCGT CAAGACGAGC TCGCGGCTCA 
GCAGCAGCAG CTTATAACGA CGGATCTTAC TTCCATTATC ATACAGCTTA 
TTTCAACTGC AGGTAGTCTT CTTCCATCTG TTAAGCATAA TATGTCAACA 
GCTCCGGGTC CATTCACTGG GCAGCCCGGT TCAGCCGTGT TCCCTTATGT 
AAGGGAGGCT AATAACGTTG CTTCACAGAG TCAGAACAAT AACAACTGTG 
GTGCTCGAGA GTTCGATTTG CCTAAGCCGG TTCTTGTTGA TGAGAGGGAA 
GGTCATGTTG TGGAGGAACA TGAGATGAAA GATGAAGATG ATGTGGAAGA 
AGGAGAGAAC CTTCCTCCCG GTTCGTATGA GATATTGCAG CTTGAGAAAG 
AAGAGATTCT CGCACCGCAT ACTCACTTCT GCACGATATG TGGCAAGGGT 
TTCAAGAGAG ACGCGAATTT GAGGATGCAT ATGAGAGGGC ATGGAGATGA 
GTACAAAACA GCAGCTGCTC TGGCGAAACC GAACAAAGAA TCCGTACCCG 
GGTCTGAGCC GATGCTGATC AAGAGGTACT CGTGCCCATT CCTTGGTTGC 
AAACGTAACA AGGAGCACAA AAAGTTCCAG CCTTTGAAAA CGATTCTATG 
CGTGAAGAAT CACTATAAAC GCACCCACTG CGATAAAAGC TTCACTTGCA 
GCCGGTGCCA TACCAAGAAA TTCTCTGTCA TTGCAGATCT TAAAACCCAC 
GAGAAGCACT GCGGGAAAAA CAAGTGGCTT TGTTCCTGTG GTACAACATT 
TTCAAGGAAA GACAAGTTGT TTGGTCACAT AGCTCTGTTC CAGGGACACA 
CGCCTGCAAT CCCTCTTGAA GAGACAAAAC CATCAGCCAG TACATCTACT 
CAGAGAGGGA GCTCTGAAGG CGGGAACAAC AACCAAGGAA TGGTTGGCTT 
CAATCTTGGT TCTGCATCAA ATGCTAACCA AGAAACCACA CAGCCTGGAA 
TGACTGATGG GAGGATATGT TTTGAGGAGT CGTTCTCACC AATGAACTTT 
GATACATGTA ATTTTGGAGG GTTCCACGAG TTTCCGCGAC TGATGTTTGA 
TGATTCAGAG AGTTCTTTTC AAATGCTTAT TGCGAATGCC TGTGGTTTCT 
CGCCCAGGAA TGTTGGTGAG TCTGTTTCAG ATACTAGTCT CTAAGGCATT 
GCCATATATA TGATAAGTTA TGTAAGATGT TCTAGTTTTT AGCCTTTTAA 
GCAGTTCTTT TGTGTCTGTA ATTTTGTTTT CGCCATAATA ATAATATCAG 
AATAGCAGAA AGTTGGATTC CAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G34370.1 [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Zinc finger, C2H2-type 0
HMMSmart Zinc finger, C2H2-like 0.0026
HMMSmart Zinc finger, C2H2-like 67
HMMSmart Zinc finger, C2H2-like 45
HMMPanther ZINC FINGER PROTEIN 9.4e-08
ProfileScan Zinc finger, C2H2-type 12.03
HMMPfam Zinc finger, C2H2-type 0.00011
Coil coiled-coil 0
superfamily C2H2 and C2HC zinc fingers 1.4e-05

See the detailed result >

AT1G34370.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Curator Summary
Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity.
Computational Description
sensitive to proton rhizotoxicity 1 (STOP1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT5G22890.1); Has 25295 Blast hits to 14002 proteins in 194 species: Archae - 0; Bacteria - 2; Metazoa - 23814; Fungi - 97; Plants - 697; Viruses - 0; Other Eukaryotes - 685 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-80-D13 introduced

  • F05421 - Specific phenotypes were NOT observed.
  • F05512 - Specific phenotypes were NOT observed.
  • F09310 - Specific phenotypes were NOT observed.
  • F13210 - Specific phenotypes were NOT observed.
  • F27522 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found