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RAFL09-81-E01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09929)

full reading [+] show sequence

Nucleotide sequence: RAFL09-81-E01 - full reading 
TGAAAGAAGA AGATCTTACA TACGAAGATC ACTCTCTGAT TCACTCTGAG 
AGACAAACTG GTTTACTTTG GTTCTGTTTG ACAAAAGGAG ACATGCAAAA 
ATAAATCTCT ATCCCTTGTT TTTCTTCTTC GCTTCATCGA TTACTCAAAG 
AGGTTGTTGG TTGTGAGAAT AATTAGCTTG TTAAGGAAGA CGTTATGATG 
CATCAGATGT TGAATAAGAA AGATTCAGCT ACTCATTCCA CTTTGCCATA 
CCTTAATACT AGCATCTCTT GGGGAGTGGT TCCAACTGAT TCCGTTGCTA 
ATCGTCGCGG TTCTGCTGAA TCACTAAGCT TGAAGGTTGA TTCAAGACCT 
GGGCATATAC AAACTACAAA GCAAATCAGT TTTCAGGACC AAGATTCATC 
TTCAACACAG TCCACTGGTC AATCTTATAC TGAAGTTGCT AGTAGTGGTG 
ATGATAATCC TTCCAGACAA ATCTCCTTTT CGGCTAAATC AGGATCTGAA 
ATAACTCAAC GGAAGGGGTT TGCAAGTAAT CCTAAACAAG GCTCGATGAC 
TGGATTTCCG AATATTCACT TTGCTCCTGC ACAGGCTAAT TTCTCATTTC 
ACTATGCTGA TCCACATTAT GGTGGTTTAT TAGCTGCAAC TTACCTACCA 
CAGGCACCAA CATGCAATCC TCAAATGGTG AGTATGATTC CTGGTCGTGT 
TCCTTTACCA GCAGAGCTCA CAGAAACTGA TCCAGTCTTT GTCAATGCGA 
AGCAATACCA CGCAATTATG AGGAGGAGAC AGCAACGTGC TAAGCTTGAG 
GCTCAAAACA AACTAATCAG AGCCCGTAAG CCCTATCTTC ATGAGTCTCG 
ACATGTTCAT GCTCTTAAAA GGCCAAGAGG ATCTGGTGGA AGATTCCTAA 
ACACCAAAAA ACTTCTTCAA GAATCCGAAC AGGCTGCTGC TAGAGAACAA 
GAACAGGACA AGTTAGGCCA ACAGGTAAAC AGAAAGACCA ACATGTCTAG 
ATTCGAAGCT CATATGCTGC AGAACAACAA AGACCGCAGC TCAACCACTT 
CTGGCTCAGA CATCACCTCT GTTTCCGACG GTGCTGATAT CTTTGGACAC 
ACTGAATTCC AGTTTTCAGG TTTCCCAACT CCGATAAACC GAGCCATGCT 
TGTTCATGGT CAGTCTAATG ACATGCATGG AGGTGGAGAC ATGCACCATT 
TCTCTGTCCA TATCTGAGAC AGTGGATCTT GGTGCTGTGT TCATGTTCCC 
ACCAAGAAGG GGAAGTCATC CTTGGCTACT ACTAGTTCTT TCGCTTGTTG 
TAACTTCAGT GTTTTTATTT CATATTATGT CTGTGTTAGA CATCACAAGA 
ACGACCAAGA TCTTCACTTT GAAACACTCT ATTACCTTTT CATCTTCTGT 
TACCATGGAT CTCTTGTCTA AACTAGTGAT ATGATTCTTC TGATAAACTT 
T

Gene models with high sequence identity

  1. AT1G72830.1 [+] show detail - nuclear factor Y, subunit A3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan CCAAT-binding factor, conserved site 0
HMMPanther TRANSCRIPTIONAL ACTIVATOR PHP2-RELATED 2.4e-136
HMMPanther CCAAT-binding transcription factor, subunit B 2.4e-136
FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
FPrintScan CCAAT-binding transcription factor, subunit B 9.1e-24
ProfileScan CCAAT-binding transcription factor, subunit B 37.254
HMMSmart CCAAT-binding transcription factor, subunit B 5.5e-38
HMMPfam CCAAT-binding transcription factor, subunit B 9.8e-30

See the detailed result >

AT1G72830.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit A3
Curator Summary
Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.
Computational Description
"nuclear factor Y, subunit A3" (NF-YA3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A8 (TAIR:AT1G17590.4); Has 684 Blast hits to 684 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 132; Plants - 381; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-81-E01 introduced

  • F12708 - Specific phenotypes were NOT observed.
  • F17037 - Specific phenotypes were NOT observed.
  • F21309 - Specific phenotypes were NOT observed.
  • F23015 - stem::abnormal / whole plant::decreased height / stem::abnormal / whole plant::decreased height / stem::abnormal
  • F27611 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism / stem::decreased thickness / whole plant::decreased height / fruit::abnormal / stem::abnormal / rosette leaf::decreased size / rosette leaf::abnormal / stem::decreased thickness / stem::abnormal / cauline leaf::dark green / whole plant::decreased height / fruit::abnormal / stem::abnormal / fruit::abnormal

Mutant lines with disrupted or induced

14 mutant lines found