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  3. RAFL09-81-M20

RAFL09-81-M20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12376)

full reading [+] show sequence

Nucleotide sequence: RAFL09-81-M20 - full reading 
ACCAATAACA CACATTCACT ACATGCACAA GCACGTATAT ATATAAATGT 
TCATGAAGGA AGAAGCTTTA ACAGAGAGAA CAACTAAAAT AGCCTAAGCC 
TCAAATTTAA TCGCTATTTA GTTTCTAATT TTGGGTTAAA AGAAATTCGG 
GTTTCAATTA ATTCGAAAGA GCGGTCACGA CGTTTCTTAG AGAATCGTCT 
TCTTCATCTT CTTCGTGAAC TTTTTGTTTT CTCCTTTTTT TGATTTTCAC 
CGCCGGAGAT TTTTGTATTT TTCCGATTAT TCGCCGGCGG TTTAGAGATA 
ATGAAGGGGA GGATATCAAA AATAGGAAGC TATGCAATCT CGTCTTCCAT 
TAGAGATCAG CATCAGCAAC CTTGTATTTC TTGTACTACT TTCAATATCC 
TTGCTCCGAT CTATAAACGT CTCTCTCACA AGGATCAAAG TCTTCGTGAA 
AGTGATAATC GAGCGTATTG GCTTGGAAGG AATCATCGAA TCATTGATTG 
GTTATTGTAT GAGAGATCTT CAATCATATG TTTACAGGAG TTTTGGGTAG 
GCAATGAAGA GCTTGTTAAT TTGTACGAGA AGAGACTTGG AGACGCTGGT 
TATCTAAGTT ACAAGCTTGG TCGTACTAAT AATCGTGGTG ATGGTTTGCT 
TACGGCTGTT CATAAGGACT ATTTTAGAGT TGTGAACTCG AGGGATTTGC 
TTTTTAATGA TTGTGGTGAT CGAGTTGCTC AGTTGCTACA TGTAGAATTA 
GTTCCTCCTT ACTCTCAGTA TGATGCTCAT CAAGAAGTTT TGATTGTGAA 
TACTCATTTG TTGTTTCCTC ATGATTCAAC ATTGTCCATA GTAAGATTGC 
AGCAGGTATA TAAGATTCTT CAGTATGTAG AATCTTACCA GAAGGAAGTT 
AATCTCAGTC CCATGCCTAT TATTCTTTGC GGAGATTGGA ACGGAAGTAA 
GCGAGGACAT GTCTACAAGT TTCTCAGGTC ACAGGGTTTT GTGTCGTCTT 
ACGATACTGC TCATCGGTAC ACAGACTCAG ATGCTCACAA GTGGGTAAGC 
CACCGGAATC ATCGGGGTAA CATATGCGCT GTCGATTTCA TATGGCTTTT 
AAATCCAAAT CGGTATAGAA AGCTGCTAAA AACAAGTTGG AGCGAGGCAG 
TCTTTGGCAT GTTCAGGTAT CTACTGAGAA GAGCTTCACT AACAGCTGAA 
GATGCTTTTG CTTTTCTAAA AACTGACAAT GATGGTGACC ACATTACATT 
CATGGGCTTC TGTGAGACTC TTCGGCAGCT CAATCTAACA GGTCACTGTA 
ATGGACTCAC GACAAAAGAG ATCAAAGATT TGTGGACTCA AGCTGACATT 
GATGGAAACG GTCTTCTAGA TTATAAGGAG TTTCAGCAAA GAATATGGAA 
CCAAACCTGG TCAGAACAAA GAGATGCAGA GGACGGAGAA GCAAAAGGTA 
ACCAAGAACA AACCGTTGGA TTCAGTGTCA AAAACGCAGT TTTGTTTCCT 
CCTGAAGTTG AAAAAGGAAT GTGGCCAGAA AATTACTCTC TATCAGATCA 
CGCGAGACTC ACTGTTGTAT TCTCACCCAT AAGAATGCCT TGCTCTCAAT 
TGGTTTCATG ACAAAACACA CTCACCAAAC AAACTTTAGC TTCTTCCATT 
TTTAAGAGAC CTCTGAGTTT TGGTGTCCCC TTACAGAGAA ACTTCGCTCT 
GTCTCTCCAT TGGATCGGCT TGACCGCTCT CACGTTGCGG TTCCTGCGTT 
GGGTGGGAAG AAGAGAGAAA GGGGGACATA GGTCTATAAA TTTTTACTGT 
GTACAAAAAC ATGTAAACTA AATATATTAG CTTCATGTAC AAAATAATGT 
CGTAGTAGAG ATTTAAGAAG CAGCTTTTTG CA

Gene models with high sequence identity

  1. AT5G54130.2 [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan EF-Hand 1, calcium-binding site 0
HMMPanther CARBON CATABOLITE REPRESSOR PROTEIN 4 3.5e-17
ProfileScan EF-HAND 2 8.488
superfamily Endonuclease/exonuclease/phosphatase 8.8e-22
superfamily EF-hand 4.7e-09
Gene3D EF-hand-like domain 0.00079
Coil coiled-coil 0
HMMPfam Endonuclease/exonuclease/phosphatase 5.3e-16

See the detailed result >

AT5G54130.2

Model type
Protein coding
Short Description
Calcium-binding endonuclease/exonuclease/phosphatase family
Computational Description
Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-81-M20 introduced

  • F24320 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found