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RAFL09-81-O15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88320)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL09-81-O15 - 5 prime EST 
GGTAATTGCC GGCGAATTCT ACTAAAGAGT TTGTTGAGCA ATGAAGGGAG 
CGACTCTCGT TGCTCTCGCC GCCACAATCG GCAATTTCTT ACAAGGATGG 
GACAATGCCA CCATTGCTGG AGCTATGGTT TATATCAACA AAGACTTGAA 
TCTACCAACC TCTGTTCAAG GTCTTGTCGT TGCTATGTCA TTGATCGGTG 
CAACGGTCAT CACGACTTGC TCAGGACCGA TATCTGATTG GCTCGGCAGA 
CGCCCCATGC TCATTTTATC ATCAGTTATG TATTTCGTCT GCGTTTGATA 
ATGTTGTGGT CTCCCAATGT CTATGTTCTG TGCTTTGCTA GGCTTCTTAA 
TGGGTTTGGT GCCGGGCTCG CGGTTACACT TGTCCCTGTT TACATTTCTG 
AAACCGCTCC TCCGGAGATC AGAGGACAGT TAAATACTCT CCCTCAGTTT 
CTTGGCTCTG GTGGAATGTT TTTGCCATAC NGNACGGT

Gene models with high sequence identity

  1. AT1G20840.1 [+] show detail - tonoplast monosaccharide transporter1
    E-value: 0; Score: 99.58

3 prime EST [+] show sequence

Nucleotide sequence: RAFL09-81-O15 - 3 prime EST 
GAGAGAAAAT TGAGTACTTA TTAGATTGAT TTTGACAACG AAACAAAGGA 
AAAAAAAAAA AAAAAAAAAA GAAACAAAAA CGATATGAAG GTATCTGAAA 
AACAAAACAA AAAGGGGATG AAGAGAATCT TTAGGTACAC AGAGCAATTG 
ACGAAGAAGA AAGTTACAAG TTATATATCC TTAGAAGGAG CAGAAGCTTG 
AGCTTGAGCT CCAAAGGCAA AGTAGTCTGT GATAACTTCC AAAGGCATGC 
CTTTAGTCTC CGGGACTTTC ATGTAAACGA AGATCCATGA GATAACGCAA 
ACCGCAGGGT AAATGCCTGA AAACACCAAC TAGTCCGATG GAGCTGAGGA 
GAACGGGAAG TGAGTACGTG ACAATAATGT CTCCAATCCA AAAGACCATA 
GCACATATGG

Gene models with high sequence identity

  1. AT1G20840.1 [+] show detail - tonoplast monosaccharide transporter1
    E-value: 0; Score: 98.78

AT1G20840.1

Model type
Protein coding
Short Description
tonoplast monosaccharide transporter1
Curator Summary
The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues.
Computational Description
tonoplast monosaccharide transporter1 (TMT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, nucleoside transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: plant-type vacuole membrane, plasma membrane, vacuole, membrane; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: tonoplast monosaccharide transporter2 (TAIR:AT4G35300.4); Has 47782 Blast hits to 35006 proteins in 2411 species: Archae - 763; Bacteria - 22324; Metazoa - 7189; Fungi - 11789; Plants - 3723; Viruses - 0; Other Eukaryotes - 1994 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-81-O15 introduced

  • F00515 - Specific phenotypes were NOT observed.
  • F05607 - Specific phenotypes were NOT observed.
  • F21501 - Specific phenotypes were NOT observed.
  • F29249 - Specific phenotypes were NOT observed.
  • F30317 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found