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  3. RAFL09-82-C23

RAFL09-82-C23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17856)

full reading [+] show sequence

Nucleotide sequence: RAFL09-82-C23 - full reading 
CCGCCCTCTC TCGTCCTCGG ATTTTTCTCG TGCTTCACTG ATAATCCAGC 
TTGACGATGT CGTTGACGGA GCTAGACGAC GGACTGGTTC GCAGGATGGC 
CATGGGCGCA GTCTTCTCTG ATTTTGGAGG GAAGATACAT TCGGTGGGTT 
TCCATAGGAC TGATGATCTA TTGGTCACAT CCAGCGAAGA TGATTCACTT 
CGCCTCTTCG ATATCGCCAA CGCTAAACAG CTGAAGATTA CATACCATAA 
GAAACATGGC ACCGATCGTG TATGCTTTAC CCATCATAGA CTGGCCCCCT 
GAATCTCCAG ACAACCAATA TCACTTAAAT AAGTGATAGT CTTAATACTA 
GTTTTTAGAC TAGTCATTGG AGAACAGATG ATTGATGTCT TAGGGCCGGA 
GAAACGCAGA CGGCGTACCA CACAGGAAAA GATCGCAATT GTTCAGCAGA 
GCTTTGAACC GGGGATGACG GTCTCCCTCG TTGCCCGGCA ACATGGTGTA 
GCAGCCAGCC AGTTATTTCT CTGGCGTAAG CAATACCAGG AAGGAAGTCT 
TACTGCTGTC GCCGCCGGAG AACAGGTTGT TCCTGCCTCT GAACTTGCTG 
CCGCCATGAA GCAGATTAAA GAACTCCAGC GCCTGCTCGG CAAGAAAACG 
ATGGAAAATG AACTCCTCAA AGAAGCCGTT GAATATGGAC GGGCAAAAAA 
GTGGATAGCG CACGCGCCCT TATTGCCCGG GGATGGGGAG TAAGCTTAGT 
CAGCCGTTGT CTCCGGGTGT CGCGTGCGCA GTTGCACGTC ATTCTCAGAC 
GAACCGATGA CTGGATGGAT GGCCGCCGCA GTCGTCACAC TGATGATACG 
GATGTGCTTC TCCGTATACA CCATGTTATC GGAGAGCTGC CAACGTATGG 
TTATCGTCGG GTATGGGCGC TGCTTCGCAG ACAGGCAGAA CTTGATGGTA 
TGCCTGCGAT CAATGCCAAA CGTGTTTACC GGATCATGCG CCAGAATGCG 
CTGTTGCTTG AGCGAAAACC TGCTGTACCG CCATCGAAAC GGGCACATAC 
AGGCAGAGTG GCCGTGAAAG AAAGCAATCA GCGATGGTGC TCTGACGGGT 
TCGAGTTCTG CTGTGATAAC GGAGAGAGAC TGCGTGTCAC GTTCGCGCTG 
GACTGCTGTG ATCGTGAGGC ACTGCACTGG GCGGTCACTA CCGGCGGCTT 
CAACAGTGAA ACAGTACAGG ACGTCATGCT GGGAGCGGTG GAACGCCGCT 
TCGGCAACGA TCTTCCGTCG TCTCCAGTGG AGTGGCTGAC GGATAATGGT 
TCATGCTACC GGGCTAATGA AACACGCCAG TTCGCCCGGA TGTTGGGACT 
TGAACCGAAG AACACGGCGG TGCGGAGTCC GGAGAGTAAC GGAATAGCAG 
AGAGCTTCGT GAAAACGATA AAGCGTGACT ACATCAGTAT CATGCCCAAA 
CCAGACGGGT TAACGGCAGC AAAGAACCTT GCAGAGGCGT TCGAGCATTA 
TAACGAATGG CATCCGCATA GTGCGCTGGG TTATCGCTCG CCACGGGAAT 
ATCTGCGGCA GCGGGCTTGT AATGGGTTAA GTGATAACAG ATGTCTGGAA 
ATATAGGGGC AAATCCACAT CATCCTAGCT CTCTAATTTG CTCTTCTCGA 
TACAATTTGG AGTCCACTGG TGAATCCTTG AGATATCTCT CAATGTATGA 
TAATCGGATC CTACGCTACT TTAAAGGGCA TAAAGACAGG GTTGTATCAC 
TTTGTATGTC TCCTATAAAT GATAGCTTCA TGTCTGGTTC TCTCGACCGA 
AGTGTTAGAC TCTGGGATCT TCGTGTAAAT GCCTGCCAGG GAATTCTACA 
TCTACGTGGT AGACCTGCAG TTGCGTATGA CCAACAAGGC CTTGTGTTTG 
CAATTGCAAT GGAAGGAGGT GCTGTTAAAT TATTTGATTC CAGGTGTTAT 
GACAAGGGTC CCTTTGACAC ATTTCTGGTG GGTGGGGATA CTGCTGAGGT 
TAACGATATA AAATTCAGCA ACGATGGGAA ATCCATGCTC CTAACGACTA 
CAAATAACAA TATCTACGTT CTTGATGCAT ATCGTGGAGA TAAGAAATGT 
GGTTTTAGTT TGGAGCCTTC ACAGGGTACA CCCATAGAGG CCACCTTCAC 
ACCAGATGGC AAGTATGTTC TGTCAGGTTC AGGTGATGGA ACCTTACATG 
CGTGGAACAT CGAGAACCCA TCTGAGGTGG CGAGGTGGGA GAACAACATA 
GGAGTAGTGT CGTGTCTGAA ATGGGCACCA CGTAGAGCCA TGTTCGTTGC 
TGCTTCTACG GTTCTCACAT TCTGGATCCC AAACGACGGT GAATCACCAG 
CCCCCGCCGA TCCTCCTACC GATCAACAAC AGTGACGACA TATATGTTTC 
CATTATGCAC TTGTGTATCG TTTTTTAATG TTGACAATTA GAAAAATTTG 
GAAGCAGTAG TATGTTAATC AAATTTAGAG TTTATGAATT TGAGTCTAGA 
TGGTTACAAT ATGTTTTCTT TAATGACTAT TTACTCTTAT TTTACGTAAG 
AAAAAAA

Gene models with high sequence identity

  1. AT5G14530.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
PatternScan WD40 repeat, conserved site 0
superfamily WD40 repeat-like-containing domain 1.4e-36
superfamily Polynucleotidyl transferase, ribonuclease H fold 8.1e-31
Gene3D WD40/YVTN repeat-like-containing domain 2.9e-35
Gene3D no description 1.7e-10
Coil coiled-coil 0
HMMPanther WD40 REPEAT PROTEIN SWD2 3e-16
HMMPanther WD40 REPEAT PROTEIN SWD2 3.5e-109
HMMPfam WD40 repeat, subgroup 2.4e-06
HMMPfam WD40 repeat, subgroup 0.00063
HMMPfam Integrase, catalytic core 1.1e-22
HMMPfam Transposase IS3/IS911 7e-19
HMMSmart WD40 repeat 4.5e-07
HMMSmart WD40 repeat 4.6
HMMSmart WD40 repeat 0.0039
HMMSmart WD40 repeat 270
ProfileScan WD40 repeat 2 14.251
ProfileScan WD40 repeat 2 11.277
ProfileScan WD40-repeat-containing domain 16.796
ProfileScan Integrase, catalytic core 14.939
ProfileScan WD40 repeat 2 9.205
ProfileScan WD40-repeat-containing domain 9.125

See the detailed result >

AT5G14530.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G66240.1); Has 22372 Blast hits to 13576 proteins in 557 species: Archae - 62; Bacteria - 5277; Metazoa - 7900; Fungi - 4335; Plants - 2143; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-82-C23 introduced

  • F22340 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found