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  3. RAFL09-82-D16

RAFL09-82-D16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09939)

full reading [+] show sequence

Nucleotide sequence: RAFL09-82-D16 - full reading 
GGTGCGTAAT TCCATCTTTG AAATCTCAGA GCAACAAAAC CCTAGCTACA 
TTTCTCGATA TCGGAGAAAA GATCCGGCGA AGATGTCAGG TGGCTTAGAT 
ATGTCACTTG ATGATATCAT CAAATCTAAT CGAAAACCTA CTGGATCTCG 
CGGCCGAGGA GGCATTGGAG GTGGCAATAA CACCGGTGGT CGCGGTGGTT 
CCGGTTCTAA TTCCGGTCCG TCTCGTCGGT TTGCTAACCG CGTAGGAGCC 
AGAACGGCGC CGTATTCAAG GCCGATTCAA CAACAACAAG CTCATGATGC 
GATGTGGCAA AACGACGTCT TCGCGACTGA TGCGTCTGTG GCGGCGGCTT 
TTGGGCATCA TCAGACTGCT GTTGTTGGTG GTGGCTCGTC TATCGAGACT 
GGAACTAAGC TTTACATTTC AAACTTAGAC TATGGTGTCT CCAACGAAGA 
TATCAAGGAG CTTTTCTCTG AGGTTGGTGA TCTTAAGCGA TATGGGATTC 
ACTATGATAG GAGTGGAAGA TCAAAGGGGA CTGCTGAAGT TGTTTTCTCG 
AGGCGTGGGG ATGCATTGGC AGCTGTCAAG CGTTACAACA ATGTTCAGTT 
GGATGGAAAA CTGATGAAGA TAGAGATTGT TGGGACTAAT CTTTCTGCTC 
CAGCTCTTCC CATTCTTGCT ACAGCTCAGA TTCCTTTTCC TACTAATGGG 
ATACTTGGCA ACTTTAATGA GAACTTTAAT GGCAATTTCA ATGGCAACTT 
CAATGGAAAC TTCAGAGGCA GAGGAAGAGG CGGTTTTATG GGGCGTCCTC 
GTGGTGGTGG TTTTGGCGGT GGTAATTTCA GAGGTGGCAG GGGAGCTAGA 
GGACGTGGTG GTCGTGGCAG TGGTGGAAGA GGACGTGATG AAAACGTATC 
TGCAGAGGAT CTTGATGCTG AATTGGACAA GTACCACAAA GAGGCAATGG 
AAACAAGTTA GAAAGGGGAG ATTAAACCTA TTGCATGTCT ACATGTATTC 
CTTCCTTTAG TGCCGATATG CTTTTGTATT AGTATGATCT TTAGATTGAA 
TGTCAATGGG TCTGACATTT TCGAGCTTTA GCTTTTGTTT TTTCTTCTCT 
TGGTGAGCTT CTTAGCTTTT TGCAGTTGAG TTCAGAGAAA CAAGCATTGT 
GTGTACCGTG GAACTCAAAA CTCTTCTAAA ATATCAATTC AAAACACAAT 
TCTAT

Gene models with high sequence identity

  1. AT5G02530.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Nucleotide-binding, alpha-beta plait 4.7e-19
HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 6.9e-71
HMMPanther RNA AND EXPORT FACTOR BINDING PROTEIN 6.9e-71
HMMSmart RNA recognition motif, RNP-1 7.9e-18
ProfileScan RNA recognition motif, RNP-1 15.75
superfamily RNA-binding domain, RBD 3.1e-21
HMMPfam RNA recognition motif, RNP-1 0.000000000000072

See the detailed result >

AT5G02530.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G59950.1); Has 12422 Blast hits to 9446 proteins in 764 species: Archae - 2; Bacteria - 1351; Metazoa - 5150; Fungi - 2013; Plants - 2049; Viruses - 53; Other Eukaryotes - 1804 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-82-D16 introduced

  • F21926 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found