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  3. RAFL09-82-E24

RAFL09-82-E24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08872)

full reading [+] show sequence

Nucleotide sequence: RAFL09-82-E24 - full reading 
AAATTCTCTA TTTGCCTCTC TCAGTTTTCG AGAAGACTAA AAGCGAATTT 
AGGGTTTAGT CATCTCTCCG ACATGGTTGG TGCCGCGATT TTGGAATCTC 
CCGGCGAAGG AATTGGATCT AACAGCATTC TCTCGCAAAA GAGACAACTT 
TCTTCTAGTG ATGCAGCTAA GAGAGACGCT AAGAAACGCT CGACAATGCT 
AATGGATCTG GAGATTCTCG ATTGTCCCAT TTGCTACGAA GCTTTCACAA 
TTCCCATCTT CCAGTGTGAT AATGGACATT TGGCTTGTTC TTCTTGCTGT 
CCCAAACTAA ATAACAAATG CCCTGCGTGT ACTTCGCCTG TTGGCCACAA 
TCGCTGCAGA GCAATGGAGA GTGTTCTTGA ATCGATCTTG ATCCCGTGTC 
CGAACGCCAA GTTAGGTTGC AAAAAGAATG TATCTTATGG GAAAGAGTTA 
ACTCATGAAA AGGAATGCAT GTTCTCTCAT TGCGCCTGCC CTGCATTGGA 
TTGCAATTAC ACTAGCTCAT ACAAGGATCT GTACACTCAC TATCGTATTA 
CCCATATGGA AATAAACCAG ATTAATACGT TCATTTGTGA CATTCCCTTA 
AGTGTCCGGA TGAACATCAG CAAAAAGATA TTGATTAGAA CGGAACACTT 
GACGAATCAT TTGTTTGCAG TGCAGTGTTT CAGGGAGCCG TATGGTGTGT 
ATGTAACTGT AAGCTGCATT GCGCCATCTT CTCCAGAATT AAGTCAGTAC 
TCATATGCTC TCTCTTACAC TGTCGATGGA CACACTGTGA TTTACCAATC 
ACCAGAGGTG AAGAGGGTTC TTAAGTTGAG TTTTCAAACC CCGCAAGAGA 
ATTTCATGTT GATTCCCAAC AGTTTATTGC GTGGTGATGT GTTGGAAATG 
AGGATTAGCG TCAAGAAGTT GAACAAAGAG TAAGAAGGTT GGGGTCTTCC 
TGTTAGAAAA CTCTTATCTG TCTCGTTTTA GTTATCTTAA CCCGCCCATA 
GTCGTTATGG TTGATGAGGG TTGTAATTTT AGAGACTTGG TGCAATCGAC 
CAACAAAACG TTTCACAATG TTTTCAATCT AAACTAAGAT ATAATTTATG 
CATAGGCCAT TTGCTATGAA GCATTGACGA TTCCTGTCTT CCAAGAAGAT 
TTTTCCAC

Gene models with high sequence identity

  1. AT5G37890.1 [+] show detail - Protein with RING/U-box and TRAF-like domains
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SEVEN IN ABSENTIA HOMOLOG 1.8e-146
HMMPanther Seven-in-absentia protein, sina 1.8e-146
Gene3D Seven In Absentia Homolog-type 3.8e-08
HMMPfam Seven-in-absentia protein, TRAF-like domain 6.7e-12
superfamily TRAF-like 2.5e-47
superfamily RING/U-box 1e-12
ProfileScan Zinc finger, RING-type 8.919
ProfileScan Zinc finger, SIAH-type 14.527

See the detailed result >

AT5G37890.1

Model type
Protein coding
Short Description
Protein with RING/U-box and TRAF-like domains
Computational Description
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-82-E24 introduced

  • F08750 - seed::increased size / seed::increased length
  • F10206 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found