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  3. RAFL09-82-H15

RAFL09-82-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17858)

full reading [+] show sequence

Nucleotide sequence: RAFL09-82-H15 - full reading 
ATGATATGCT TCGCTCTTTC GGTTGTTTAT GCTATGCTCA CATTCGCCCG 
CGAAACAAGG ATAAATTTAC TTCTAGAAGT CGCAAGTGTG TCTTTATAGG 
CTATCCCCAT GGCAAGAAGG CATGGCGTGT TTACGATCTG GAAACCGGAA 
AAATATTTGC AAGTAGGGAT GTTCGATTTC ATGAGGATAT CTATCCATAT 
GCGACTGCTA CTCAATCCAA TGTTCCTCTA CCCCCTCCTA CTCCTCCAAT 
GGTGAATGAT GACTGGTTCT TACCTATCTC CACCCAAGTT GATTCCACTA 
ATGTTGACTC TTCATCCTCA TCTTCTCCTG CGCAATCTGG ATCGATCGAT 
CAGCCACCTA GATCGATCGA TCAATCACCT TCTACGTCGA CGAATCCAGT 
CCCAGAGGAA ATTGGATCGA TCGTTCCCTC ATCTTCTCCT TCTAGATCGA 
TCGATCGATC CACATCTGAC TTGTCAGCTT CAGATACGAC TGAATTACTA 
AGTACAGGCG AATCTTCTAC TCCTTCATCT CCGGGTCTTC CTGAGTTATT 
GGGCAAAGGT TGTAGAGAAA AGAAGAAGTC TGTTCTTCTT AAAGATTTTG 
TCACAAACAC TACATCGAAG AAGAAAACAG CATCTCATAA TATACACTCT 
CCCTCACAAG TTCTACCCTC TGGTCTCCCC ACTTCTCTGT CCGCCGATTC 
GGTCTCTGGT AAGACTCTTT ATCCTCTCTC AGATTTTCTG ACTAACTCTG 
GTTATTCTGC AAATCATATT GCTTTTATGG CAGCAATCCT TGATAGCAAT 
GAACCTAAGC ATTTTAAAGA TGCTATTTTA ATTAAAGAGT GGTGTGAAGC 
AATGTCTAAG GAGATAGACG CACTCGAAGC TAATCACACA TGGGATATTA 
CAGATTTACC TCATGGGAAA AAGGCTATCA GTAGTAAGTG GGTTTACAAG 
TTGAAATACA ATTCAGATGG AACACTTGAA CGTCACAAAG CTCGCCTTGT 
TGTTATGGGT AATCATCAAA AAGAAGGAGT AGACTTCAAA GAAACGTTTG 
CTCCTGTGGC TAAATTGACT ACAGTTAGAA CCATTTTGGC TGTCGCTGCT 
GCAAAAGATT GGGAGGTCCA CCAGATGGAT GTTCATAATG CATTTTTACA 
TGGCGATCTT GAGGAAGAAG TTTACATGCG ACTACCTCCA GGTTTCAAAT 
GTTCCGACCC TTCTAAAGTG TGTCGCCTTC GCAAGTCCTT GTATGGTCTC 
AAACAGGCTC CCCGTTGTTG GTTTTCTAAG TTGTCGACCG CACTTCGTAA 
CATTGGTTTC ACTCAGAGTT ATGAAGACTA CTCCCTATTT TCTCTGAAAA 
ATGGCGACAC GATTATTCAT GTCCTAGTCT ATGTTGACGA CCTCATTGTT 
GCTGGTAATA ATCTTGATGC CATTGATCGA TTCAAATCAC AGCTTCACAA 
ATGTTTTCAC ATGAAAGATC TCGGTAAGCT TAAGTACTTT CTCGGTCTTG 
AAGTGTCTCG TGGTCCGGAT GGATTTTGTC TCTCTCAACG CAAATACGCA 
TTGGATATCG TCAAAGAAAC TGGTCTGCTA GGTTGTAAGC CTTCCGCTGT 
TCCTATTGCT CTTAACCACA AACTTGCTTC CATAACCGGA CCGGTGTTTA 
CTAATCCCGA ACAATATCGT CGCTTAGTTG GTCGGTTTAT CTACCTTACT 
ATCACGAGAC CTGATCTTAG CTATGCGGTT CACATTCTTT CTCAGTTTAT 
GCAAGCTCCG TTGGTTGCTC ATTGGGAGGC TGCGCTCCGT CTCGTTCGTT 
ATCTCAAAGG CTCACCGGCG CAAGGCATTT TTCTCCGATC AGATAGTTCT 
CTTATCATCA ATGCTTATTG TGACTCTGAT TATAACGCTT GCCCTCTCAC 
ACGAAGATCT CTCTCGGCAT ATGTCGTTTA CTTGGGGGAC TCTCCTATTT 
CTTGGAAGAC AAAGAAACAA GACACAGTCT CCTACTCTTC GGCTGAGGCC 
GAGTATAGGG CAATGGCATA TACGCTTAAA GAACTGAAAT GGTTGAAAGC 
TCTACTCAAG GATTTGGGTG TTCATCACAG CTCTCCTATG AAGTTGCACT 
GTGATAGCGA GGCTGCCATT CATATTGCGG CAAATCCTGT GTTTCATGAG 
CGCACTAAAC ACATCGAATC GGATTGTCAT AAGGTTCGTG ACGCTGTTCT 
CGACAAACTC ATCACTACTG AACACATTTA TACTGAAGAC CAGGTCGCCG 
ATCTTCTTAC CAAGTCGCTA CCAAGACCGA CCTTTGAAAG ACTCTTGTCC 
ACGTTAGGTG TTACGGATTA CGTACCATCA ACGTGAGGGG GGGTATTAGA 
GTAGATACGA TATATGTAAA TCCTAGATTT ACTAGATACG TTCTTATCTT 
CTATGAGCAA CTCTCCTTGT ATAAATACTC TCTTCGACTA TTGGAATAAA 
CACACTTTTA CATAAAAAA

Gene models with high sequence identity

  1. AT2G23330.1 [+] show detail - transposable element gene
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther GAG-POL-RELATED RETROTRANSPOSON 0
HMMPfam Reverse transcriptase, RNA-dependent DNA polymerase 2.3e-102
superfamily DNA/RNA polymerases 1.4e-42

See the detailed result >

AT2G23330.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-82-H15 introduced

  • F29641 - rosette leaf::increased size / stem::abnormal / whole plant::increased height

Mutant lines with disrupted or induced

3 mutant lines found