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  3. RAFL09-82-J05

RAFL09-82-J05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17859)

full reading [+] show sequence

Nucleotide sequence: RAFL09-82-J05 - full reading 
CGATCCTTCT ATGGTTGCTC AAATCCGACC AAGAACAACA CAAAAGGCGT 
TCGTGGTGAC AAATCCGGAA CAAGACAGTA CTCTTGAAGT ACAAGAAACA 
GAGACACTCA AAGAAGAGCA ATCAACAGAG AAGATGAAGA AGCAGCCAAC 
ACCATTGAGA CCAGTGGAGA AACAGCTGAA CGTGAAGAGC AAGGGTATGG 
GCGATTTTGG TGGTCAGTGG CTAAGCAGTG TCACACGTCA CGTTAGGATC 
TACGCTGCTT ATATTGATCC AGAGACTTGT GAGTTTGACC AGTCACAAAT 
GGATAAACTC ACTTTGATTC TTGATCCTAC TGAAGAATTT GTGTGGGATG 
ATGAAAGCTG TAACAAGGTC TATTCTTATT TCCAAGAACT CGTCGATCAC 
TACGAGGGAG CACCATTAAC GGAGTACACA TTGAGATTGA TAGGATCGGA 
CGTAGAACAT TACATAAGGA AGATGTTGTT CGATGGAGAA ATACAATACA 
ATATGGATGC AAGAGTTCTT AATTTCAGTA TGGGAAAGCC TCGTGTACAA 
TTCAATACCA GTAACATTGA AGGTGGTGGA GATGGTCAGC CTCAAGAGGA 
CGCTTAGTGA AACAAACTCT ATTTTATAAT CATGTAATGG GAATATAAAT 
ATATTGTAGT ATGCTTTTTA ATTTTGTCTA TCACAAAGTA ACATATGTAT 
ATATCATGAC ATATGCTATA ATTATTTTTG TAATAATCAA TCTTAAGTTT 
CTTTGTCTTA AAAGAAAAA

Gene models with high sequence identity

  1. AT4G37925.1 [+] show detail - subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G37925.1

Model type
Protein coding
Short Description
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
Curator Summary
Encodes subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly.
Computational Description
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (NDH-M); FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor; INVOLVED IN: NADH dehydrogenase complex (plastoquinone) assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); CONTAINS InterPro DOMAIN/s: NAD(P)H-quinone oxidoreductase subunit M (InterPro:IPR018922); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-82-J05 introduced

  • F06138 - whole plant::increased height / fruit::increased length / fruit::increased thickness
  • F25312 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found