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RAFL09-83-B22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08892)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-B22 - full reading 
GGTCTCACTG AAACTGTGAA AATTTTATCT CTTTTATAGA TAAAGAATCT 
TGCTTTTTTC AGTTTTCAGT ATGAAGAAGA ATTGAAGAGA GTGTCCGAGG 
AAGGAGACCT TTGGTTTCAG TTTGTGAGTC TTGTTGTAAT GGCTTTATCA 
ATGGAGTTTG GGTTTTCAAT TGGGTCATGC TTCAAGGCAC CAAACCCACC 
TGTTCTAATC TCTGCAAGCC CTAATAAGAT CAATTTCACG TTGAGAAGGA 
GAAAGAAAAG ATTCTTACTT AGAGTCTCTG CTGTGTCGTA TAAGGAATTC 
GCAGAGTCTG CTTTAGAAGA AACCAGGAAA AGGATCGTTC TTGAACCTTC 
ACATCTCCAG GAAAAGTATA GTAGCATGAC AGGACTAGAT GGTAAGACCG 
AACTTCAAAT GCTTGCTTTT AAATCTTCAA AGATTAGACT CTTGAGGAGT 
ATGGCAATAG AGAATGAGAC AATGCAGGTC TTTGACTTTG CGGGTTTCAT 
GGAGCCTGAG TATGATACTC CCATATTCTG TGCTAACTTT TTCACATCTA 
CCAACGTTAA CATAGTTGTA TTGGACCTTA ATCCTTTGCA TCAGTTGACT 
GACCAGACGG ATTACCAAGA CAAGTATTAT AACAAGATAA TGTCCATATA 
TCACAAATAT GCTGAGACTT TCCCATGGGG AGGGAAATTG ACTGGTGAAT 
CCATAAAGTT TTTCTCGCCT TTGGTGATGT GGACTAGGTT TTCGTCTAGC 
AAAGAAAAAC ATAAGGCTTT GTTCTCTGCG TTTCTAGAGT ACTATCAGGC 
ATGGCTTGAG ATGACAATCC AAGTGAGGGA GGAGATGGAA CCATCTCATG 
TGAGAGCCAA TTGTGAAGCA CAACACAAGT ACCTGACATG GCGAGCACAA 
AAGGATCCTG GACATGGTCT TCTTAAAAGA TTAGTAGGTG AAGCAAAGGC 
AAAGGAGCTG CTAAGGGATT TCCTGTTCAA TGGGGTGGAT GAGTTAGGCA 
CAAAAACATT CATTGATTAC TTTCCAGAGT ACCAAACAGA AGATGGAACT 
GTAAGCGATA AACGAAGTAT CATTGGGAAG TCATATGAAA CTCGTCCATG 
GGATTTAACA GGACAATTTA TCGGCTAACA ATGATATATG TGAACAAGTC 
AGATTTCAGA GTCATCAACA CAAGAGGACG TGAACTTAGG GAAGTAGGAA 
TAAGAAAGAG CAGCATGAGG AGTCTCTCAG GTCTATCTGC ATTTCAAGAT 
GATTGTTTGA GTTACCATGC ATTGTAGTTT TACAAGTGTA GCTCTCAGCC 
CTTCATCAAA ATGAGAATCC TCGAGTATGA TATGATTTTA ATGAAAATGT 
ATTCGTCT

Gene models with high sequence identity

  1. AT3G09150.2 [+] show detail - phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G09150.2

Model type
Protein coding
Short Description
phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)
Curator Summary
Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.
Computational Description
ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 407 Blast hits to 407 proteins in 62 species: Archae - 0; Bacteria - 187; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 172 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-B22 introduced

  • F12803 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found