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  3. RAFL09-83-C08

RAFL09-83-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08893)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-C08 - full reading 
TNTTCGACAC TTTTCACTGA TCTATTCACT CACTCAAATC GCCGCCGGAG 
CTAAATCAAT CAACAATGAC GTCGACCTAC ACGAGATTCG ATACCGTATT 
TCTCTTTTCT AGGTTCGCCG GCGCTAAGTA TTCGCCGTTA TTGCCGTCTC 
CGTCGTTTAC TTTATCTACT TCCGGCATTC ATATCAGAAC CAAACCGAAT 
TCTCGTTTTC ACTCGATTAT AGCATCCTCC TCATCTTCAT CTGTAGTCGC 
CGGAACTGAT AGCATTGAGA TTAAATCGTT GCCGACGAAG CCTATTGAAG 
GACAAAAGAC TGGAACTAGC GGACTCCGGA AGAAGGTGAA AGTTTTCATG 
GAAGATAATT ATTTAGCCAA CTGGATTCAG GCATTGTTTA ATTCATTGCC 
ACTTGAGGAT TATAAGAATG CAACGTTGGT TTTAGGAGGT GATGGTCGTT 
ACTTTAACAA AGAAGCTTCA CAGATCATTA TCAAAATTGC TGCTGGGAAT 
GGAGTTGGAC AAATTTTAGT TGGAAAGGAA GGCATTTTGT CAACCCCAGC 
GGTTTCCGCT GTAATCAGGA AAAGAAAGGC AAATGGAGGA TTCATTATGA 
GTGCAAGCCA TAATCCTGGT GGACCTGAAT ATGACTGGGG TATCAAGTTC 
AATTACAGCA GTGGTCAGCC TGCTCCTGAA ACCATTACTG ACAAAATATA 
TGGAAATACA CTTTCAATCT CTGAGATTAA GGTGGCAGAG ATTCCTGATA 
TTGATCTTTC TCAAGTTGGA GTGACCAAAT ATGGGAATTT CAGTGTAGAA 
GTTATAGATC CTGTTTCCGA CTATTTGGAG CTCATGGAGG ATGTTTTCGA 
CTTTGATCTC ATCAGAGGTC TTCTTTCAAG ATCAGATTTT GGGTTCATGT 
TTGATGCCAT GCATGCTGTT ACTGGTGCTT ATGCGAAACC AATTTTTGTC 
GACAATCTTG GAGCCAAACC GGATTCAATT TCCAACGGAG TTCCCCTGGA 
AGATTTTGGG CATGGCCATC CTGATCCTAA TTTGACATAT GCAAAGGATT 
TGGTTGATGT CATGTATCGT GACAATGGAC CGGATTTCGG AGCAGCAAGT 
GATGGTGATG GTGACAGAAA TATGGTTTTA GGAAACAAAT TCTTTGTCAC 
TCCTTCAGAC TCTGTAGCTA TCATCGCAGC CAATGCACAA GAAGCAATTC 
CATATTTCCG TGCTGGTCCT AAGGGGCTGG CACGTTCTAT GCCGACAAGT 
GGTGCTCTTG ATCGTGTTGC CGAGAAGTTG AAGCTTCCTT TCTTCGAGGT 
TCCCACTGGA TGGAAATTTT TTGGAAATCT TATGGATGCT GGAAAATTGT 
CAATCTGTGG AGAAGAGAGC TTTGGCACAG GTTCTGATCA CATCCGTGAG 
AAGGATGGAA TATGGGCTGT GTTGGCGTGG CTTTCGATCC TTGCTCATCG 
CAACAAGGAC ACGAAACCAG GGGACAAGTT GGTGTCTGTT GCAGATGTTG 
TGAAAGAGTA TTGGGCGACA TACGGAAGGA ACTTTTTTTC AAGATACGAC 
TATGAAGAAT GTGAATCTGA AGGAGCCAAT AAAATGATCG AGTATCTTAG 
AGAAATCTTG TCTAAGAGCA AGGCCGGTGA CGTTTATGGA AACTATGTCC 
TCCAGTTTGC AGATGACTTC TCATACACAG ACCCTGTTGA TGGAAGTGTT 
GCATCCAAGC AAGGTGTTCG GTTTGTGTTC ACGGATGGAT CCAGAATCAT 
ATTTCGTTTA TCCGGAACTG GCTCAGCTGG AGCTACAGTG CGAATATACA 
TTGAACAATT TGAGCCAGAC GTTTCAAAAC ATGATGTGGA TGCACAAATA 
GCTCTTAAAC CTTTAATCGA TCTTGCATTG TCTGTATCAA AGCTGAAGGA 
CTTCACAGGG AGGGAGAAGC CCACTGTCAT TACATGAAGA GAAGTGTCAC 
ATGGTCCTTT CGATAAGGCA ATTTGGGTTC CTGACTTCAG TTTTGTCTGC 
CATGTTTATT TGAAAATTCC AGAGCAATGA AATGCTTATC CTTGTAACAT 
ATATAACTTA TATACGTCTT TCTATATAAA TAAAAGCATT TCTTTT

Gene models with high sequence identity

  1. AT5G51820.1 [+] show detail - phosphoglucomutase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Alpha-D-phosphohexomutase, conserved site 0
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 5.6e-35
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 8.2e-27
HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 5.7e-12
HMMPfam Alpha-D-phosphohexomutase, C-terminal 1.4e-10
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-56
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.5e-39
Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3e-38
Gene3D no description 3.2e-60
superfamily Phosphoglucomutase, C-terminal domain 5.2e-53
superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 4.6e-51
superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.4e-39
HMMPanther PHOSPHOGLUCOMUTASE 1.1e-215
HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 1.1e-215
FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20
FPrintScan Alpha-D-phosphohexomutase, N-terminal 5.6e-20

See the detailed result >

AT5G51820.1

Model type
Protein coding
Short Description
phosphoglucomutase
Curator Summary
Encodes a plastid isoform of the enzyme phosphoglucomutase involved in controlling photosynthetic carbon flow. Effective petiole movement against the direction of the gravity requires functional PGM activity that is required for full development of amyloplasts.
Computational Description
phosphoglucomutase (PGM); FUNCTIONS IN: phosphoglucomutase activity; INVOLVED IN: response to cold, starch biosynthetic process, detection of gravity, carbohydrate metabolic process; LOCATED IN: apoplast, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, conserved site (InterPro:IPR016066), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: Phosphoglucomutase/phosphomannomutase family protein (TAIR:AT1G70730.3); Has 12307 Blast hits to 12296 proteins in 2800 species: Archae - 231; Bacteria - 9586; Metazoa - 483; Fungi - 211; Plants - 168; Viruses - 0; Other Eukaryotes - 1628 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-C08 introduced

  • F07342 - Specific phenotypes were NOT observed.
  • F14349 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::upturned / rosette leaf::abnormal / cauline leaf::decreased size
  • F25731 - Specific phenotypes were NOT observed.
  • F30228 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found