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RAFL09-83-E23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09951)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-E23 - full reading 
ATTTTTATTT GAAAGACATT TTTGCCTATT TCATTCATAT TTTGCTTTTA 
AAACGAGAAT TATAATTCTT CGACTCCGTG GGATAAGTTT TCTAAAAAAT 
CGAAGAAAGA TCGATGGCTC TAGATATCTG CGTGAAGGTT GCCGTCGGTG 
CTCCTGATGT TCTCGGCGAC TGTCCGTTTA GCCAACGTGT TCTTCTGACA 
CTTGAGGAGA AGAAGCTTCC CTACAAGACC CATCTGATTA ACGTCTCCGA 
CAAACCCCAA TGGTTCTTAG ACATTAGTCC AGAGGGGAAA GTTCCGGTGG 
TGAAGCTTGA TGGCAAATGG GTGGCTGATT CTGACGTAAT TGTTGGACTT 
CTTGAAGAGA AATATCCAGA GCCTTCTCTC AAGACTCCTC CTGAATTTGC 
TTCTGTAGGA TCCAAAATCT TTGGTGCTTT TGTGACTTTC TTGAAGAGCA 
AAGACGCTAA TGACGGATCC GAGAAGGCTT TGGTTGATGA GTTAGAAGCG 
TTGGAGAATC ACTTGAAGAC ACATTCTGGT CCTTTTGTAG CTGGAGAGAA 
GATTACTGCA GTGGATTTGA GTTTAGCACC AAAGCTTTAC CATCTTGAGG 
TTGCTCTTGG TCATTACAAG AACTGGTCTG TCCCTGAGAG CTTGACCAGT 
GTTCGTAACT ACGCCAAGGC TTTGTTCTCT AGGGAGTCGT TTGAGAACAC 
CAAGGCTAAG AAAGAGATTG TGGTTGCGGG TTGGGAATCG AAGGTGAATG 
CGTGATGTGG ATCCATGCTT CTCTAGTTAA TGTTGCTTTA GAACTATTCT 
TCACTGAATA ATAAGAATGC ACGAGTATGT GTGTGTTCTT GTTTTTGTTA 
GAGTTGGTTA TCAATAATGA TGCGATAAAG CAGCATATCT TTTTTTGATA 
ATATACACCT CTTATTCAAT TTGGTATT

Gene models with high sequence identity

  1. AT1G75270.1 [+] show detail - dehydroascorbate reductase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutathione S-transferase, N-terminal 7e-07
HMMPanther DEHYDROASCORBATE REDUCTASE 2e-141
HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 2e-141
ProfileScan Glutathione S-transferase, N-terminal 14.488
ProfileScan Glutathione S-transferase/chloride channel, C-terminal 11.051
Gene3D Thioredoxin fold 3.4e-19
Gene3D Glutathione S-transferase, C-terminal-like 4.1e-39
superfamily Glutathione S-transferase, C-terminal-like 1e-25
superfamily Thioredoxin-like fold 4e-20

See the detailed result >

AT1G75270.1

Model type
Protein coding
Short Description
dehydroascorbate reductase 2
Computational Description
dehydroascorbate reductase 2 (DHAR2); FUNCTIONS IN: glutathione binding, glutathione dehydrogenase (ascorbate) activity; INVOLVED IN: protein amino acid glutathionylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: dehydroascorbate reductase (TAIR:AT1G19570.1); Has 4940 Blast hits to 4851 proteins in 1062 species: Archae - 0; Bacteria - 1874; Metazoa - 1090; Fungi - 227; Plants - 921; Viruses - 0; Other Eukaryotes - 828 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-E23 introduced

  • F00420 - Specific phenotypes were NOT observed.
  • F08018 - Specific phenotypes were NOT observed.
  • F08944 - Specific phenotypes were NOT observed.
  • F09102 - Specific phenotypes were NOT observed.
  • F22207 - rosette leaf::dark green / rosette leaf::abnormal / flower::abnormal / fruit::abnormal
  • F23236 - Specific phenotypes were NOT observed.
  • F25214 - Specific phenotypes were NOT observed.
  • F28509 - seed::increased length
  • F29349 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

11 mutant lines found