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  3. RAFL09-83-H02

RAFL09-83-H02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12380)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-H02 - full reading 
ATCTCTCTCT ATCTCTTCTC CGCTCACAGC GAATCTCTCT CTCTCTCTCT 
CTCTCTCTCT CTTCTCCGGT GTATTCCGTT CTCCGGGAAT TTCTCCGAAG 
AGGGAGAGAG GAAAAAAAAA ACGTCCGATT CAATCTCTTC GTTGCTCGAC 
GAATTTTTCT TAAGCTTTCC TTATTGGGAG CTGCAGGTGA CTCATCGAAA 
TGCAGTGAAA TGAGTGTTGA TGAGAAGAGA CAGCTTGTTT ATGAACTGTC 
GAAGCAATCA CATCTAGCTG CTGAGGTCTT GCAGGCATGG AGCCGCCAAG 
AGATTCTACA GATCTTATGC GCAGAAATGG GAAAAGAAAG GAAGTATACT 
GGTTTGACCA AAGTCAAGAT CATCGAGACC CTTTTGAAAA TTGTATCTGA 
GAAAAACTCT GGAGAGTGTG AAGGGAAGAA GAGAGATTCT GATTGTTTGC 
CTATTCAGAG AAACACTAAG AGACAAAGGA AGGTTGATAA TCCTTCTCGG 
TATGTGATTC CAGCAACCAA CATTGTAACA AGCAACAATG CCTCAGGGAG 
CTGCAGCTCG GTTAATACTA AAGGTGAGAG TACTACCATC TACTGCAAAA 
ATTTGGCTTG TCGTGCTGTA CTGAGACAGG AAGACTCGTT TTGCAGAAGG 
TGTTCATGTT GCATCTGTCG TAAGTATGAT GATAACAAAG ATCCTAGTCT 
CTGGTTAACA TGTAGCTCAG ATCCTCCATT TGAGGGTGAG TCTTGCGGAT 
TCTCGTGTCA TCTTGAATGT GCTTTCAACA CTGAAAAATC CGGTCTTGGA 
AAAGACAAGC AAAGTGAGGG ATGCTGCTTC TATTGTGTCT CTTGCGGTAA 
AGCAAACAGT TTGCTTGAAT GCTGGAAGAA GCAATTGACG ATTGCTAAAG 
AAACCAGAAG GGTAGAAGTG CTTTGTTACC GTCTTTTCTT AGTCCAGAAA 
CTATTGAAGA GCTCAACTAA ATACCGAAAT CTGTGTGAGG TTGTGGATGA 
AGCTGTCAAG ACTCTTGAAG CTGATGTGGG TCCTCTCACT GGTCTTCCTA 
TGAAAATGGG TAGAGGAATT GTAAACAGAC TTCATTCGGG ACCCGATGTG 
CAGAAACTTT GCTCTTCTGC TCTTGAATCT CTTGAAACTA TAGCAACTAC 
ACCTCCTGAT GTTGCTGCAT TACCTTCACC TCGCAGCTCC AAGATGCAGC 
AAGATACAGC AACCACAGGA TCAACCAAGA TCAGGTTCGA GGATGTAAAC 
GCGACTTCAC TTACAGTGGT TCTCGCCTCT AATGAAATTC CCTCACCTCC 
AAACATCGTT CACTACAGTA TTTGGCATCG TAAGGTACCA GAAAAAGATT 
ACCCGGAGAA ATCGACTTGC ACATTGTTTA TTCCAAACAC AAGATTTGTT 
GTCTCTGGAT TAGCTCCAGC TTCTGAGTAC TGCTTCAAAG TTGTGTCCTA 
TAGTGGAACC AGAGAAATGG GCGTTGATGA AATCAATGTT TTGACACGTA 
GCGCTGAAGA AGGAGCGAAT TGCTCTTCGG CAGTGGAAAG AAGCGTAAGC 
CCTCTCACAA ATTGCAGCAC ATTGTCTTCT AATCCTTCTT CTGTTGAAGC 
TGAGTCCAAC AACGATTACA TTGTCCCAAA GAAGCCATCT TCAAAGAACG 
AAGACAACAA TTCTCCTTCA GTCGATGAAA GTGCTGCGAA AAGGATGAAG 
AGGACAACCG ACTCAGACAT TGTACAGATT GAGAAGGACG TTGAGCAGAT 
TGTGTTGTTG GATGATGAAG AACAAGAAGC TGTTCTGGAT AAGACGGAAT 
CTGAAACTCC AGTCGTGGTT ACTACGAAAA GTCTTGTTGG TAATCGAAAC 
AGTTCAGATG CGAGTTTGCC AATTACTCCC TTCAGGTCAG ATGAAATCAA 
GAACCGTCAA GCTAGAATCG AAATATCGAT GAAAGACAAC TGTAACAACG 
GTGATCATTC AGCGAATGGA GGAACAGAAA GTGGATTAGA GCATTGTGTG 
AAGATCATAA GACAACTCGA GTGTTCAGGA CATATCGATA AGAATTTCAG 
ACAGAAGTTT CTGACTTGGT ATAGCTTGAG AGCAACGTCA CAAGAGATTA 
GAGTTGTGAA GATATTCATT GATACATTTA TTGATGATCC CATGGCTTTG 
GCTGAGCAGC TCATTGATAC TTTCGACGAC CGTGTTTCGA TAAAGCGTTC 
TGCGGTTGGT GGTAGCGGTG CGTCTGCAGT TGTTCCATCT GGATTCTGTA 
TGAAGTTGTG GCATTAGAGA ATGGGAACTT GTGCTCTGTT TTTTTCAAGT 
CATTTTCAAA ACGTTATTCT AATTATTGGG AAATTTGCAT TATTGGAACA 
TTTCCATGCA AGAACAGTAG TACTGTTGCT ATCGAATAGA TCGTCTTTGT 
CGGATTATTT ATTTATTTTT AGTGGATTTG ATTCCATTTA TAATTTAGTA 
ATTAGTCCTA GACTGAATTA TTCTTATTTC GTTGAC

Gene models with high sequence identity

  1. AT4G30200.1 [+] show detail - vernalization5/VIN3-like
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Fibronectin, type III 11.324
HMMPfam Protein of unknown function DUF1423, plant 1e-09
HMMPfam Fibronectin, type III 5.6e-05
superfamily Fibronectin, type III-like fold 5.8e-07
HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 3.8e-291
HMMPanther VERNALIZATION-INSENSITIVE PROTEIN 3 3.8e-291

See the detailed result >

AT4G30200.1

Model type
Protein coding
Short Description
vernalization5/VIN3-like
Curator Summary
Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.
Computational Description
vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-H02 introduced

  • F13644 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found