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  3. RAFL09-83-J05

RAFL09-83-J05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09953)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-J05 - full reading 
AATCCTCTGT TTCTTCTTCT TCATTTTAAG CTTCAGGGTC ATTTCTGTTT 
CTGCACAACA AACTTGTGAC AACACTGCTG GTAGTTTCAA ACCCAATAGT 
ACTTATGACA ACAACCGTCG TCTCCTCCTC TCTACCTTCG CCTCTAACGT 
CACGGCTCAG AACGGCTACT TCAATGGTTC GTTCGGGCTT GGTACAGACA 
GAGTCTACGC CATGGGGATG TGCGCTCCAG GTGCTGAACC TGATGTTTGC 
TCCAACTGTA TTAAGAACAC AGCAGAGGGT TTACTACAGA TCTGTCTAAA 
CCAGACGGAC GGTTTCTCAT GGTCTGGTGA AGAAACCCTT TGCCTTGTTC 
GTTACTCTAA CAAATCCTTC TCCGGGCTAC TTGGCTTGGA GCCGTCTAAT 
GATTTCTTCA ATGTAAACGA AATAAGAAAA GAAGACCAGA AGGAATTTGA 
TAGTGTGTTT GATGAGTTAA TGTTTCGTAC AATCCAAGGA GCATCTTCAT 
CGGTGAGAAA CAATTCTAAT TCGTTATCAT TGTCTGGTAA ATATTATGCA 
AAGGATGTAG CTCCTGAACC GGTTTACGGG AACATATCGG TGGTGATGCA 
ATGCACTCCA GATGTTTCTT CAAAGGATTG TAATCTTTGT CTTGAGAGAA 
GTCTTGATTT CTATAAGAAA TGGTACAATG GGAAGAGAGG CACCATTATA 
TTGCGGCCAA GTTGCTTTTT CCGGTGGGAA TTGTATACTT TCTTTGGTGC 
TTTTGATAGT ATTAATGCTA GACACCCACC GCCTCCTCCA CGCCCGCTTT 
CACCGCCCCC TTTAAAGACG CCTTCTGTAA CCAACCAAAC CAATATTACC 
AAGAAGAATG ATAGTAGAAT CTCAGGAGGA ACTATCGCGG CGATAGTCGT 
TGTAGTTGTT GTTACAATAA TATTGATTGT TGTAGGCTTG GTTATATGCA 
AGAGAAGAAA GCAAAAGCAA GAAATTGAAC TTCCAATCGT TTTAAATGAA 
GCGGAATCTG TTCAGTTTGA TTTAAAGACA ATTGAAGCAG CAACGGGCAA 
CTTTTCTGAG CATAACAAGC TTGGTGCAGG TGGATTTGGT GAAGTTTACA 
AGGGTATGCT TTTGAATGGG ACTGAAATTG CGGTAAAAAG ATTGTCAAAA 
ACATCAGGAC AAGGTGAAAT AGAGTTCAAG AACGAGGTGG TTGTTGTTGC 
AAAGCTTCAA CACATAAATC TTGTTAGACT TCTCGGGTTT TCGCTCCAAG 
GAGAAGAGAA GTTACTCGTC TATGAATTTG TTCCAAACAA AAGTCTCGAT 
TATTTCCTTT TTGACCCTAA CAAGAGAAAT CAGTTGGACT GGACAGTGAG 
ACGCAACATC ATCGGTGGGA TTACTCGAGG AATTCTATAT CTTCATCAAG 
ATTCACGGCT CAAAATCATA CATCGTGACC TCAAAGCGAG TAACATTCTC 
TTAGATGCGG ATATGAACCC GAAAATTGCT GATTTCGGAA TGGCAAGGAT 
CTTTGGAGTG GACCAAACTG TAGCCAATAC CGCAAGAGTA GTTGGAACCT 
TTGGTTACAT GTCTCCTGAG TATGTGACAC ATGGCCAATT CTCAATGAAA 
TCAGACGTCT ATAGTTTTGG AGTATTGATT CTTGAGATCA TTAGTGGCAA 
AAAGAATAGC AGCTTCTATC AGATGGATGG CTTAGTTAAC AATTTAGTCA 
CATATGTCTG GAAACTTTGG GAGAACAAAA CAATGCATGA GCTCATAGAT 
CCCTTTATTA AAGAAGATTG TAAAAGCGAT GAAGTCATTA GATACGTTCA 
TATTGGGCTG TTATGTGTTC AAGAAAATCC TGCAGATCGA CCAACAATGT 
CTACGATTCA CCAAGTGCTC ACAACCAGCT CAATTACTCT ACCTGTGCCT 
CAGCCACCTG GATTTTTCTT CAGGAACGGA CCAGGATCGA ACCCATCAAG 
CCAGGGAATG GTGCCTGGTC AATCGAGCAG CAAGTCTTTT ACTAGTTCTG 
TAGATGAAGC AACAATCACC CAAGTTAATC CTCGTTGAAA TATCTAGCAT 
GTTCTGTTTT TGTTTTTTGA TGTTTCCATA TAGAAATAAG TTTTATAGGG 
GTCACAATAA AAAAAAATAA AGGGTTTGAA CATAAATTTG TAAGTTTAAG 
GGGGTTAAAT TAGGAGAAAA ATAAACAATA TTAT

Gene models with high sequence identity

  1. AT4G23250.1 [+] show detail - kinases;protein kinases
    E-value: 0; Score: 99.26

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 1.1e-34
HMMSmart Tyrosine-protein kinase, catalytic domain 1e-35
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine-threonine/tyrosine-protein kinase 7.8e-47
HMMPfam Protein of unknown function DUF26 5.1e-13
HMMPfam Protein of unknown function DUF26 3e-14
superfamily Protein kinase-like domain 2.1e-81
HMMPanther SERINE/THREONINE RECEPTOR-LIKE PROTEIN KINASE 4.5e-280
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.5e-280
ProfileScan Protein kinase, catalytic domain 38.266
Gene3D no description 7.6e-23
Gene3D no description 4.3e-51

See the detailed result >

AT4G23250.1

Model type
Protein coding
Short Description
kinases;protein kinases
Computational Description
EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-J05 introduced

  • F08629 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found