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  3. RAFL09-83-M11

RAFL09-83-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09955)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-M11 - full reading 
ATAACTCCAA TTCCACCGCT GCGACGAGAG AGGAGCACAG AGATCTCTCG 
TTTCGTTTTT CCCGGAAAAT CTGAGGAAAT AAAATTAAGC AAAAGTTTCC 
ATCGATCCTC TGAGAAAAAA TTCGACTCTC TAGTCCACGA GTTTTTTTTT 
TTGTTCACCT CTCTCTTTTT CGTTAATCTC TCTCAAACAA CGCCTCTTCA 
TCATTTCCTT GTAATTCACT TTCTTCTCCG TTTTTTTTTT TTTTTTGAAT 
CTCTCTTCGT CCTTCGCCGT TTCGATTTCT TGTTTCCTCT ACTTGATGAT 
GAAATTTTGA TCAGATCTAG TGTAGAATAG TTAGGATTTA CCCAGAGAGA 
TTATGTTTAT GGATCGAGAG AGACGGAGTT CTGGTCGTAA TGGGACTCCT 
GAATATAGCA ATGGCAAATT CCGAGATGAT AATGGTTTTG GATTCTTAGA 
TCGATTGGAA AATTGCCGTG AGAAGAGTCC TCCTAGATCG AAGATCCTTC 
GGATCCCGTC TCCGACCTCG TCTCCTCCAC CTTCTAGCTC TTCTCCGCCA 
TTTCATGGTT CCAATTCGCC TGACCGTGGA TATATCGAAC ACCGCATCTC 
CAAGTTTGAT ACTCTCGCCG GCGTTGCCAT CAAATACGGT GTTGAGGTTG 
CAGATGTGAA AAAGATGAAT AACCTTGTTA CTGATCTTCA AATGTTTGCT 
CTCAAGTCTC TTCAGATTCC GTTACCTGGG AGACATCCTC CTTCTCCATG 
TTTATCTAAT GGCTCCTTAA ACCATGGAGA GGGATGTTCA TGCCACGAAC 
CGGAATCACC AAACCATAGC GAACAGGAAG TGTTTGACTC ATTTCAGTCT 
CTGAGATTGA AATCTTCGGA AAAGAAAGTT TCTCCAGCCA TGTACTCACT 
GCAAGGTTAT TACGGGCTAA AACCAGCAGA CAGAACAGTC TCTGATGGAG 
GATGCTTCGA GATGGGAAAT TACAAGACGG AAACTTCTCA TCATATCTTC 
AACAACGGTG ATAACGGATA TCTCAGACCT TTCCCATCCA CAAATACTCC 
CTTAAATCAC CACAGGAAAT CTAGAAGCTT GGTCAATGCG CTTATCGAAG 
AGGTTAACCA ATCACCTGAT AATAATACTC AAGAACCAAC ATCTGATAAG 
TTTATGAGAA GACGCCAAAA ATCTGAGGCC GATTTTTCAT CCCGGACTCC 
AGAACTTGTG TTGAAAGAAG AGAACGGTAG CAGCAATGGC GGATTTTTAT 
CAATAGCTGG AAAAGGCTTA GCTTTGAGAT CGAAAGCGTC AAGCAGAACC 
AATCTAGCAG CAGAATCTGA GAACGGTAAT TTCAATCCGG TATCAATGAA 
CTTGATGGAT GCTCCAGTTT CAGACAGCTT TAGCAGTGTA AGAAAATCGT 
CGAGTGCATC GAGTCTACAA GATCCAGATG GTAACAGCAA TAATGGTTCG 
TTGTCGCTAT GGCCAACGTC AAAGTGGAGC TTGAAACCGG ATTTGCTTAC 
ACCTGCGGCC ATTACAAGTT CCATCTTTGA TGGATTACCA AAGCCTTTAA 
CTGGTCGAAG AAACAAAACG GCTCTGGACT AAACACAAGG TCAGTTTCTG 
GTTATTTATA ACTGCCTTAT TCTTTTTTGG GGTACTATAC AAATCAATTG 
TCAAAAGAAG CTATTTAGCT TAATGCGGAG TAAATACAAA AGTAAAGAGA 
TTAGAGGAAA ACAAAATTGA AGGAAGGAAG AAAGAAAAAC TTCCGGAAAT 
TGAAATTTAT AAGGAAGCTT CTGATGATGT AATGATTGGG TTTTTTTTGT 
AAGTTATATT CTGTACCATT TTCTGGGTGG GGGTTGTATC GACAAAATCT 
GTAGCGTAGT TTTATTTTAT TTTTGATTTA ATGATACATT GTCACAAC

Gene models with high sequence identity

  1. AT5G08200.1 [+] show detail - peptidoglycan-binding LysM domain-containing protein
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

See the detailed result >

AT5G08200.1

Model type
Protein coding
Short Description
peptidoglycan-binding LysM domain-containing protein
Computational Description
peptidoglycan-binding LysM domain-containing protein; BEST Arabidopsis thaliana protein match is: Peptidoglycan-binding LysM domain-containing protein (TAIR:AT5G23130.1); Has 390 Blast hits to 387 proteins in 72 species: Archae - 0; Bacteria - 10; Metazoa - 233; Fungi - 7; Plants - 113; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-M11 introduced

  • F09048 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds