1. Home
  2. Full-length cDNAs
  3. RAFL09-83-O07

RAFL09-83-O07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08906)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-O07 - full reading 
ATCGGAATAT CTCTCTTCCT CTGTTTCTTC GCCATTCTCT CAGCTTTTCT 
CCTTCTTCTT CGTCTTTGTC AGAGTGAATG GAGCTGTGGA CAGAAGCTAG 
AGCCTTAAAG GCAAGTCTAA GAGGAGAATC TACTATATCT CTCAAACATC 
ACCAAGTGAT TGTGTCGGAA GATTTAAGCC AAACTTCTTC CTTGCCGGAA 
GATTTCTCCG TTGAGTGTTT CCTCGATTTC TCAGAAGGTC AAAAAGAAGA 
AGAAGAAGAA GTTGTCTCTG TTTCTTCTTC ACAAGAGCAA GAAGAACAAG 
AACATGATTG TGTCTTTAGT TCACAACCTT GCATCTTTGA TCAACTTCCT 
TCTTTGCCGG ATGAAGATGT GGAAGAGCTT GAATGGGTAT CTCGTGTTGT 
GGATGATTGT TCATCACCAG AAGTTTCACT TCTCTTAACA CAAACACATA 
AAACCAAACC AAGCTTCTCA AGAATTCCGG TTAAACCAAG AACCAAACGG 
TCTCGGAACA GTTTAACCGG TAGTCGTGTT TGGCCACTCG TTTCAACCAA 
TCATCAACAT GCAGCAACAG AGCAGTTGAG GAAGAAGAAA CAAGAAACTG 
TCCTTGTGTT TCAACGAAGA TGCAGCCATT GTGGCACAAA CAACACACCA 
CAGTGGAGAA CCGGTCCGGT CGGTCCAAAA ACCTTATGTA ATGCATGTGG 
AGTCCGGTTT AAGTCTGGTA GGCTCTGCCC GGAATACAGA CCGGCGGATA 
GTCCGACGTT CTCGAATGAG ATTCACTCAA ATCTTCATAG GAAGGTTCTG 
GAATTAAGAA AGAGTAAAGA GTTGGGTGAA GAAACAGGTG AAGCTAGTAC 
TAAATCAGAC CCAGTCAAAT TTGGCAGCAA GTGGTAGATA AGACTTAGGT 
AAAATCTACT TTTTGTAACA TTATCTGTAG TGTTGTAATT TAACAACTTG 
CTTCTTAACA TTTTGAAACT GTTTCAGGAA CTAGTCTTAA GTAAACAATG 
GTTTTCTAT

Gene models with high sequence identity

  1. AT4G34680.1 [+] show detail - GATA transcription factor 3
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

Program Description E-value
superfamily Glucocorticoid receptor-like (DNA-binding dom 8.7e-19
PatternScan Zinc finger, GATA-type 0
HMMPanther TRANSCRIPTION FACTOR GATA-3 0.00065
HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00065
Gene3D Zinc finger, NHR/GATA-type 0.00047
HMMPIR Transcription factor, GATA, plant 9.6e-154
ProfileScan Zinc finger, GATA-type 11.952
HMMSmart Zinc finger, GATA-type 3.7e-14
HMMPfam Zinc finger, GATA-type 1.2e-15

See the detailed result >

AT4G34680.1

Model type
Protein coding
Short Description
GATA transcription factor 3
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 3 (GATA3); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 7 (TAIR:AT4G36240.1); Has 1460 Blast hits to 1422 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 551; Plants - 835; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-O07 introduced

  • F07410 - seed::increased size / seed::increased length
  • F07716 - rosette leaf::decreased size / cauline leaf::decreased size / stem::decreased thickness
  • F08530 - Specific phenotypes were NOT observed.
  • F09718 - Specific phenotypes were NOT observed.
  • F14133 - seed::increased size / seed::increased length
  • F16807 - Specific phenotypes were NOT observed.
  • F16809 - Specific phenotypes were NOT observed.
  • F21118 - Specific phenotypes were NOT observed.
  • F24801 - Specific phenotypes were NOT observed.
  • F25031 - seed::increased length / seed::decreased width
  • F28226 - Specific phenotypes were NOT observed.
  • F29042 - Specific phenotypes were NOT observed.
  • F30404 - seed::increased size

Mutant lines with disrupted or induced

15 mutant lines found