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  3. RAFL09-83-O09

RAFL09-83-O09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08907)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-O09 - full reading 
ACCACTTTAC CACTTATCAA AGCTTCTTCA AAGCTTGCAA AAAATTCTCC 
ACAGTCTCGA AGAAGTAGAA GAAGATGGGT AAGGAAGATG ACCGAGGAGA 
AGAGTACCTG TTCAAGATTG TCCTAATCGG CGATTCCGCT GTCGGAAAAT 
CGAACTTGCT GTCTCGATTT TCGCGGGATG AGTTCGACAC GAACTCAAAA 
GCGACAATCG GAGTGGAATT TCAGACGCAG CTGGTTGAAA TCGAAGGGAA 
AGAAGTGAAA GCTCAGATCT GGGACACTGC TGGTCAAGAG AGGTTTAGAG 
CTGTCACTTC TGCTTATTAC AGAGGTGCTT TTGGTGCTCT CATCGTTTAT 
GACATCACTC GAGGTGACAC TTTCGAAAGC GTTAAACGTT GGCTCCAGGA 
ACTCAACACT CATTGTGACA CGGCAGTGGC ACAAATGCTA GTTGGGAATA 
AATGCGATTT GGAGGATATA AGAGCGGTGA GTGTGGAGGA AGGGAAAGCT 
CTTGCGGAGG AAGAAGGATT GTTCTTTATG GAAACATCGG CTCTGGACGC 
CACAAATGTA GACAAAGCCT TTGAGATCGT TATCAGAGAG ATCTTCAACA 
ATGTCAGCCG CAAACTTCTC AACTCTGATG CTTACAAAGC AGAGCTTTCC 
GTTAACCGGG TCAGCCTTGT CAACAACCAA GATGGCTCCG AGAGCTCTTG 
GCGGAATCCG TCTTGTTGCT CCCGATGATT TCAATCAATC TTGTTTTTAC 
CAGAGAAAGC TTTATAAGGT TATAATTATC ATTTATGAAG TCAGACTTAT 
AATAAGATAC TTGCAATCTG TTTTGTCTTG ATACTACACA TTGGTTCTGG 
CCGAGGGATT AAACAAAAAT GACCTGACCG AATAGAGAAA ATGGC

Gene models with high sequence identity

  1. AT3G07410.1 [+] show detail - RAB GTPase homolog A5B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Rab11-related 4.5e-80
HMMPanther RAS-RELATED GTPASE 4.5e-80
HMMSmart Ras small GTPase, Ras type 7.1e-28
HMMSmart Ras small GTPase, Rab type 9.4e-103
HMMSmart Small GTPase, Rho type 0.0000000000023
HMMSmart Ran GTPase 0.000021
HMMPfam Ras 4.1e-62
FPrintScan Ras GTPase 1.1e-40
FPrintScan Ras GTPase 1.1e-40
FPrintScan Ras GTPase 1.1e-40
FPrintScan Ras GTPase 1.1e-40
FPrintScan Ras GTPase 1.1e-40
HMMTigr Small GTP-binding protein 4.4e-36
Gene3D no description 1.9e-63
ProfileScan Small GTPase 34.201
superfamily P-loop containing nucleoside triphosphate hyd 8.5e-62

See the detailed result >

AT3G07410.1

Model type
Protein coding
Short Description
RAB GTPase homolog A5B
Computational Description
RAB GTPase homolog A5B (RABA5b); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G43130.1); Has 27936 Blast hits to 27886 proteins in 749 species: Archae - 21; Bacteria - 143; Metazoa - 14734; Fungi - 3835; Plants - 3288; Viruses - 20; Other Eukaryotes - 5895 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-O09 introduced

  • F16202_77 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found