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  3. RAFL09-83-O17

RAFL09-83-O17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08909)

full reading [+] show sequence

Nucleotide sequence: RAFL09-83-O17 - full reading 
TTTCGCTTAC TTGCTGAGAA AAAAGCTCCA AACTTTCTCT TATTGGGTTT 
TTGATCAGCT CCGGAGATAA AAAAAAAAAG TATTTTCTTG AAATCGAAAT 
CTGATCTCCA TTGAGAGTCT TGCTACTTGA TTTGGATTCC GATTTAAGGT 
TTTCTCGAGA ATTCTTTTGC TGCAGTTATT AGATTTTGAC GAGCCGTTGA 
TCTGGACGGA GTTCCAGATC TCCGGGTCGT GGTACCAAGG AATTAGGGTT 
TTAGCACAAA GTTCTCGTTT TTCTGTGTAT TCGAGGGATG AAGGAGTTTT 
CGGGTCGATG TTCGCTGCTC TAACATTTGG AGTATGAAGA TGAACATGAA 
GAAATTTCTC AAAAAGCTTC GTATCACGCC CAATCAACGA GACGATGGTG 
AAGGTTCAGT CTCTAACAGA AGCAATAAGT CTAGTGATGC AGAACCATCT 
CCTTCTGATT CATTGAGGTC TCAAGATAAC TCTGAATTCA AACCCTTTTT 
GGGTTTATCA AATTGGTTAA GCTCTGTTAC TCACAGGAAA AGCCCTTCTT 
CTTCCAATGC CACCAATAGC AAAGAGGATG ACACTACCAT GGAACATGGT 
GGTCCCGTTG GGTCGGAATC TGGGATGCAG GGTTTGGGTT CTAGTAGTAA 
TTCCAAGGAT CCAGAAGTTG AAGAAGAATA TCAGATACAG TTGGCTCTAG 
AGTTAAGTGC TAGGGAGGAT CCTGAAGCTG CTCAGATTGA GGCTATGAAG 
CAGTTCAGCT TAGGTTCTCG TCCTTCTGCT CCCGAGAATA CTCCAGCTGA 
ACTCATGGCA TATAGATATT GGAATTATAA CTGTCTTGGC TATGATGACA 
AGATTGTGGA TGGTTTCTAT GACCTGTGTG GAGTAATGAA TGAATCTTCC 
TTAAAAAGAA TACCTCCCTT AGTTGATCTT CAGGGGACAC TTGTGTCAGA 
TGGTGTAACT TGGGATGCTG TTCTAGTGAA CAGCAGCAAA GATTCTAATC 
TGTTGAGACT TGAACAAATG GCTCTTGATA TTGCAGCAAA ATCAAAGTCA 
GCGTCTTCTT CAGGGTTTGT GAACAGTGAA TTGGTAAGGC AACTGGCAGT 
TTTAGTTGCT GATTACATGG GTGGACCAGT TTTGGATCCA GATAGCACGT 
TAAGAGCTTG GTGGAGTCTG AGCTACAGCT TGAAAGCAAC CCTCCGTAGC 
ATGGTTCTGC CCCTGGGTTC TCTAACTATT GGATTGGCTC GTCATCGTGC 
CTTGTTATTC AAAGTTTTGT GTGATAGTGT CGGCGTTCCT TGTCGAATAG 
TCAAAGGACA GCAATATACC GGTTCAGATG ATGTGGCAAT GAACTCCATT 
AAGACTGATG ATGGCAGGGA GTACATTGTT GATCTCATGG GAGATCCAGG 
CACGCTTATC CCCGCTGATG CAGCTGGACT ACAAATGGAC TTTGATGATT 
CTGTCTACTC TGCCAGTCCC AGAGATGTTG ATTCATCTCA TGTAGCTTCT 
TCCAGCAGTG GGGTCGAGAG CTCAATTGAA GAACACACAG AATCTTGGTC 
AGCGGAACAT CGTTCTAGGA CCAAGGGTTC CCGGGAGGAA AACCAATCTG 
CAGGTGGAGG GGATCTCATG ATTCCAAATA TTAGGGAAGC TGTGGGAAGT 
CAAAAGGCTC CTGTTCAACA TCTTTCCAGC AAGCCTACTC ATTCTTTCAC 
TCATGCCAGA TCACCTTCGT GGACTGAAGG TGTTAGCTCT CCAGCTGGAC 
GCAGGATGAA AGTCAAAGAT GTTTCACAAT ATATGATTGA TGCTGCCAAA 
GAGAATCCAC AACTAGCTCA GAAGCTTCAT GATGTGTTAC TTGAAAGTGG 
AGTTGTAGCT CCTCGAAATT TATTTTCGGA AGTCTATTCA GAGTCAATGG 
AGGCAACAGG TGAAATCAAA TCTGTGGCTG AATCCAATGA TGAGAAAGGG 
AAAGATTTTG GAACAATCCA GCAAGGAAGA AACCAGAGCA ACCTTGGCCC 
TGTGAGGTTT TTGCCTCCTC TTCCAAGACC GCAATCTAAA GCAATTACCC 
ATGACCTACG TGAACATTCA GGATCTGGAC TCGGTCATTT GTCTGAACAT 
TGCAATATTG ATGGTCACTC TGATTCCTCA CATTCTGAAA CATCTACTGA 
CTATCCCAGA AATGTTCCTG TTGCCGTAGC TGCAGCGGCT GTTGTTGCGT 
CTTCCATGGT TGTTGCTGCC GCCAAGTCAG CAAACTCGGA TTCCTCCACT 
TTAGAACTTT CTGCTGCAGC TGCTGCTGCA GTTATGGCGA CAGCTGCAGC 
AGTGAGCAGG CAGTTTGAAC TAGATTCACT TAGCAACGGG GATGCTGGTT 
CTGGTGGGCT TCATGGGGTA GATTCAGGAG GAGAACGAAT ATCCGACAGA 
TCTATTGGCA ATGAAAGTTC AAAATCTGAT GCTGCAATTG ATGATGTAGC 
TGAATGCGAG ATTTTGTGGG AGGAAATTAC TGTGGCTGAG CGTATCGGAC 
TGGGATCATA CGGAGAGGTA TATAGGGGAG ATTGGCATGG AACTGCAGTG 
GCTGTCAAGA AGTTCATTGA CCAAGATATT ACTGGAGAGG CACTGGAGGA 
ATTCAGAAGT GAGGTCCGGA TGATGAGAAG GCTCAGACAC CCTAATATTG 
TTCTCTTCAT GGGAGCTGTA ACCCGCCCAC CAAATCTCTC AATTGTTACA 
GAATTTCTTC CTCGAGGTAG CTTGTATAGG TTAATTCACA GGCCTAATAA 
CCAATTAGAT GAGCGAAAGC GTCTGAGGAT GGCTCTTGAT GCTGCTCGTG 
GAATGAATTA TTTACACAGC TGTAATCCGG TAATTGTCCA TCGTGATCTT 
AAATCTCCAA ACCTTCTAGT TGACAAAAAT TGGGTTGTCA AGGTGTGCGA 
TTTTGGGTTG TCTAGAATGA AAGTAAGCAC ATACCTCTCT TCAAAGTCAA 
CAGCAGGCAC GGCTGAATGG ATGGCTCCAG AAGTGCTTAG AAACGAACCC 
GCAGATAAGA AGTGTGATGT GTACAGCTAC GGGGTCATTC TCTGGGAACT 
CTTTACGTTA CAGCAACCAT GGGGAAAAAT GAACCCAATG CAAGTGGTTG 
GCGCGGTTGG TTTTCAACAT CGACGACTTG ATATCCCTGA ATTTGTGGAT 
CCTGGAATTG CAGATATCAT CAGGAAATGT TGGCAGACGG ATCCAAGGTT 
AAGACCAAGT TTTGGAGAGA TCATGGATTC TTTAAAGCAG CTACAGAAAC 
CTATCCAGAG AGCAGCAGTT CCCAGTTCTT CTGCATTGAC CACTGATGAG 
CAGGAACAAT AACATCATGC TTGATGAAGA AGATGACTAA ATGATGATGA 
AGGTGGGGAT CATTCTTTAC ATATTAATGT TCTGTGGTGT GCTGTCCATG 
TGTATTCACC ATGTTTTGTT TACAAATTGT AAAAAAAGAT GAATGCAAAA 
CAAAACAAAC AAAGAAAAAA AGAAAAAAGA AGTTATTTTG TCAATGGTAA 
AAAAATCATT GAGAAT

Gene models with high sequence identity

  1. AT1G18160.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 99.97

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine-threonine/tyrosine-protein kinase 1.1e-68
ProfileScan Protein kinase, catalytic domain 43.622
HMMSmart Serine/threonine-protein kinase domain 3.8e-61
HMMSmart Tyrosine-protein kinase, catalytic domain 4e-62
FPrintScan TYRKINASE 1e-11
FPrintScan TYRKINASE 1e-11
FPrintScan TYRKINASE 1e-11
FPrintScan TYRKINASE 1e-11
FPrintScan TYRKINASE 1e-11
Gene3D no description 5.9e-21
Gene3D no description 3.1e-57
HMMPanther MAP3K DELTA-1 PROTEIN KINASE 3.4e-225
HMMPanther SERINE-THREONINE PROTEIN KINASE 3.4e-225
superfamily Protein kinase-like domain 1.3e-83

See the detailed result >

AT1G18160.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-83-O17 introduced

  • F08720 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found