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RAFL09-84-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08915)

full reading [+] show sequence

Nucleotide sequence: RAFL09-84-B03 - full reading
GTTCTCAGTT TGAGAGAAAC AAAACCTTCC AATACAACCA GAGAGTCGAC 
GAAGAAGAAA GAAACCATGT CCCAACATCT TCTTCTTCTC ATTCTCCTCT
CGCTACTTCT TCTTCATAAA CCCATTTCCG CCACTACAAT TATTCAAAAA
TTCAAAGAAG CCCCACAGTT TTACAATTCT GCAGATTGCC CCTTAATCGA
TGACTCCGAG TCCGACGATG ACGTGGTCGC CAAACCAATC TTCTGCTCAC
GTCGAGCTGT CCACGTGGCG ATGACACTCG ACACCGCCTA CATTCGTGGC
TCAGTCGCCG CTGTTCTCTC CGTCCTCCAA CACTCTTCTT GTCCTGAAAA
CATTGTTTTC CACTTCGTCG CCTCTGCTTC CGCCGACGCT TCTTCCTTAC
GAGCCACCAT ATCCTCCTCT TTCCCTTACC TTGATTTCAC CGTCTACGTC
TTCAACGTCT CCTCCGTCTC TCGCCTTATC TCCTCCTCTA TCCGCTCCGC
ACTAGACTGT CCTTTAAACT ACGCAAGAAG CTACCTCGCC GATCTCCTCC
CTCCCTGCGT CCGCCGCGTC GTCTACCTAG ACTCCGATCT GATCCTCGTC
GACGACATAG CAAAACTCGC CGCCACAGAT CTCGGCCGTG ATTCAGTCCT
CGCCGCGCCG GAATACTGCA ACGCCAATTT CACTTCATAC TTCACATCAA
CCTTCTGGTC TAATCCGACT CTCTCTTTAA CCTTCGCCGA TCGGAAAGCA
TGCTACTTCA ACACTGGAGT CATGGTGATC GATCTTTCCC GGTGGCGCGA
AGGCGCGTAC ACGTCACGCA TCGAAGAGTG GATGGCGATG CAAAAGAGAA
TGAGAATTTA CGAGCTTGGT TCGTTACCAC CGTTTTTATT GGTTTTTGCC
GGTTTGATTA AACCGGTTAA TCATCGGTGG AACCAACACG GTTTAGGAGG
TGATAATTTC AGAGGACTGT GTAGAGATCT CCATCCTGGT CCGGTGAGTC
TGTTGCATTG GAGTGGGAAA GGTAAGCCAT GGGCTAGGCT TGATGCTGGT
CGGCCTTGTC CTTTAGACGC GCTTTGGGCT CCGTATGATC TTCTTCAAAC
GCCGTTCGCG TTGGATTCTT GACCAGTCTC GATCGGTTTA CTTATTATTA
ATACCGGTAC ATACATATAT ACAATATACA GGTGAATTTT TGTTTTTACT
GTACATCGAT TCGTAAATCA TACAACC

Gene models with high sequence identity

  1. AT1G19300.1 [+] show detail - Nucleotide-diphospho-sugar transferases superfamily protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.8e-61
superfamily Nucleotide-diphospho-sugar transferases 5.5e-58
HMMPfam Glycosyl transferase, family 8 1.3e-59

See the detailed result >

AT1G19300.1

Model type
Protein coding
Short Description
Nucleotide-diphospho-sugar transferases superfamily protein
Curator Summary
The PARVUS/GLZ1 gene encodes a putative family 8 glycosyl transferase that contributes to xylan biosynthesis. Its gene expression shows good co-variance with the IRX3 gene involved in secondary cell wall synthesis. PARVUS/GLZ1 is predicted to have galacturonosyltransferase activity and may be involved in the formation of the complex oligosaccharide sequence present at the reducing end of xylan. PARVUS is expressed in cells undergoing secondary wall thickening, and parvus mutants have thinner cell walls.
Computational Description
PARVUS (PARVUS); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase-like 2 (TAIR:AT3G50760.1); Has 1825 Blast hits to 1814 proteins in 439 species: Archae - 2; Bacteria - 918; Metazoa - 149; Fungi - 0; Plants - 715; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-84-B03 introduced

  • F01720 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found