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  3. RAFL09-84-C16

RAFL09-84-C16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09963)

full reading [+] show sequence

Nucleotide sequence: RAFL09-84-C16 - full reading 
ATTCTCTTTC TCTCTATCTA TCATCATCAT CCTCGTAATC CTCTCCTTTC 
TCCTTCAGAC CCCTCCTAGT TGCTGTTTAA ACAAACAAAA AAAGACTGCT 
TCTCTTTCTT ATTTCTCTCA TCATCATCAT CAATGGTTTT ATGAGATTTA 
TATCAAAAAA CATTGAGGAG CTAGAGAGAA AGAGAGAGTG TGTGTGTAGA 
AAAAGATTGA AACATCATCA AGATTGATGG AGCAAGGAGG AGGTGGTGGT 
GGTAATGAAG TTGTGGAGGA AGCTTCACCT ATTAGTTCAA GACCTCCTGC 
TAACAACTTA GAAGAGCTTA TGAGATTCTC AGCCGCCGCG GATGACGGTG 
GATTAGGAGG TGGAGGTGGA GGAGGAGGAG GAGGAAGTGC TTCTTCTTCA 
TCGGGAAATC GATGGCCGAG AGAAGAAACT TTAGCTCTTC TTCGGATCCG 
ATCCGATATG GATTCTACTT TTCGTGATGC TACTCTCAAA GCTCCTCTTT 
GGGAACATGT TTCCAGGAAG CTATTGGAGT TAGGTTACAA ACGAAGTTCA 
AAGAAATGCA AAGAGAAATT CGAAAACGTT CAGAAATATT ACAAACGTAC 
TAAAGAAACT CGCGGTGGTC GTCATGATGG TAAAGCTTAC AAGTTCTTCT 
CTCAGCTTGA AGCTCTCAAC ACTACTCCTC CTTCTCATCC TCACGCTCAT 
CAACCAGAAC AGAAACAACA ACAACAACCA CAACAAGAGA TGGTCATGAG 
CTCGGAACAA TCATCATTAC CATCATCATC AAGATGGCCA AAGGCAGAGA 
TTCTAGCGCT TATAAACCTG AGAAGTGGAA TGGAACCAAG GTACCAAGAT 
AATGTACCTA AAGGACTTCT ATGGGAAGAG ATCTCAACTT CAATGAAGAG 
AATGGGATAC AACAGAAACG CTAAGAGATG TAAAGAGAAA TGGGAAAACA 
TAAACAAATA CTACAAGAAA GTTAAAGAAA GCAACAAGAA ACGTCCTCAA 
GATGCTAAGA CTTGTCCTTA CTTTCACCGC CTCGATCTTC TTTACCGCAA 
CAAAGTACTC GGTAGTGGCG GTGGTTCTAG CACTTCTGGT CTACCTCAAG 
ACCAAAAACA GAGTCCGGTC ACTGCGATGA AACCGCCACA AGAAGGACTT 
GTTAATGTTC AACAAACTCA TGGGTCAGCT TCAACTGAGG AAGAAGAGCC 
TATAGAGGAA AGTCCACAAG GAACAGAAAA GAAGACCTTG TGATGAGAGA 
GCTGATTCAA CAACAACAGC AACTACAACA ACAAGAATCA ATGATAGGTG 
AGTATGAAAA GATTGAAGAG TCTCACAATT ATAATAACAT GGAGGAAGAG 
GAAGATCAGG AAATGGATGA GGAAGAACTA GACGAGGATG AGAAGTCCGC 
GGCTTTCGAG ATTGCGTTTC AAAGCCCTGC AAACAGAGGA GGCAATGGCC 
ATACGGAACC ACCTTTCTTG ACAATGGTTC AGTAAAATCA GAATCATTGT 
TTCAAGAAAA TGTACTTATG TGTGCATAGT TTTCTAAACA AAACACCCAA 
AAACACAAAA CACAAACACA CACACACACA CATCTGACAC CACAAACTGA 
AATATCAAGG TCTCATCGAT CTTCGATTTT TCAGTGAATA CAATTCTTTT 
TCACATTCTT TCCCTTTTGT TCTTTTCTTT CTCACTGTCT CTTGTTTGTT 
TCTTCTTGTT CATTGTTTTC TTCTTCCAAC CCCCACATGA ACAAAAAACT 
CTAGCTAAAA GGTCTTTTAG ATT

Gene models with high sequence identity

  1. AT1G33240.1 [+] show detail - GT-2-like 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan MYB-like 6.934
ProfileScan MYB-like 6.667
Coil coiled-coil 0
HMMSmart SANT, DNA-binding 0.015
HMMSmart SANT, DNA-binding 0.011

See the detailed result >

AT1G33240.1

Model type
Protein coding
Short Description
GT-2-like 1
Curator Summary
Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.
Computational Description
GT-2-like 1 (GTL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 6156 Blast hits to 4698 proteins in 415 species: Archae - 8; Bacteria - 243; Metazoa - 2333; Fungi - 696; Plants - 1321; Viruses - 126; Other Eukaryotes - 1429 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-84-C16 introduced

  • F05636 - seed::increased size
  • F11631 - Specific phenotypes were NOT observed.
  • F24232 - Specific phenotypes were NOT observed.
  • F25801 - Specific phenotypes were NOT observed.
  • F26141 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / whole plant::decreased height
  • F26345 - seed::increased size / seed::increased length
  • F26519 - rosette leaf::dark green / rosette leaf::abnormal / stem::abnormal / stem::present in fewer numbers in organism / rosette leaf::dark green / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal / cauline leaf::dark green / stem::abnormal
  • F28119 - Specific phenotypes were NOT observed.
  • F28721 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found