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  3. RAFL09-84-F21

RAFL09-84-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08920)

full reading [+] show sequence

Nucleotide sequence: RAFL09-84-F21 - full reading 
AGAAAACCCT TCTTTCGCTG TTGTTGCCGG AGAAAATGGT GATGATGTTG 
AAGAAGACAG TGAAGAAAGG TTTAATCGGC GGAATGAGCT TCGCTAAAGA 
CGCCGGAAAA ATCAATTGGT TTCCCGGTCA TATGGCTGCA GCTACTCGCG 
CCATTCGTAA CCGCCTCAAG CTCTCCGATC TCGTTATCGA AGTTCGCGAT 
GCTCGTATTC CTCTGTCATC GGCGAACGAA GATCTACAAT CCCAAATGTC 
AGCTAAGAGA CGTATCATTG CTCTGAATAA GAAAGATTTA GCAAACCCTA 
ATGTTCTCAA TAAATGGACT CGTCATTTCG AATCCAGCAA GCAAGATTGT 
ATTGCCATTA ATGCTCATAG CAGAAGCTCT GTCATGAAGC TGCTTGATCT 
CGTGGAGTTG AAGCTCAAAG AAGTGATTGC TAGGGAGCCT ACTTTACTTG 
TAATGGTGGT TGGTGTCCCC AATGTTGGAA AATCTGCGCT CATTAACTCG 
ATCCATCAAA TTGCAGCAGC TCGTTTTCCG GTGCAGGAGA GATTAAAGAG 
AGCTACGGTT GGTCCATTGC CTGGTGTAAC ACAAGATATT GCTGGTTTCA 
AGATTGCTCA TCGACCTAGT ATATATGTTC TAGACTCCCC TGGTGTGTTG 
GTTCCAAGTA TCCCTGATAT CGAAACCGGT TTGAAGCTTG CTCTTTCAGG 
GTCCGTTAAA GATTCAGTAG TGGGTGAAGA GCGGATTGCA CAATACTTTC 
TAGCTATTCT AAACATTCGA GGGACTCCTC TTCATTGGAA GTACTTAGTT 
GAGGGAATAA ACGAAGGGCC TCATGCAGAC TGCATCGATA AGCCAAGCTA 
TAACTTAAAG GATCTTCGAC ACCAGAGAAC CAAACAACCA GATTCATCTG 
CTCTGCACTA TGTCGGGGAT ATGATTTCAG AAGTGCAACG ATCACTGTAT 
ATAACACTCT CAGAATTTGA TGGGGACACG GAGGATGAGA ATGATTTAGA 
ATGTTTGATA GAGCAACAGT TTGAAGTTCT ACAAAAGGCA TTGAAGATTC 
CTCACAAAGC ATCCGAAGCA AGGTTAATGG TCTCCAAGAA ATTTCTTACT 
TTGTTTAGGA CAGGTAGACT TGGTCCCTTT ATCCTTGACG ATGTCCCTGA 
AACTGAAACT GACCACCCCA ATTCAAAACG GGTAGTTGTT TTGTAAAATC 
TTAAAGCAAA TTGTACCACA TTATGCGTGC AGCTTAAGAT GATGATTCTA 
TTTGTTT

Gene models with high sequence identity

  1. AT2G41670.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily P-loop containing nucleoside triphosphate hyd 2.5e-32
superfamily P-loop containing nucleoside triphosphate hyd 2.1e-13
HMMPfam GTP-binding protein, HSR1-related 1.5e-06
Gene3D no description 2.1e-38
HMMPanther GTP-BINDING PROTEIN-RELATED 5.6e-79
HMMPanther GTP-BINDING PROTEIN-RELATED 5.6e-79

See the detailed result >

AT2G41670.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G10650.1); Has 3980 Blast hits to 3980 proteins in 1445 species: Archae - 109; Bacteria - 2376; Metazoa - 398; Fungi - 429; Plants - 195; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-84-F21 introduced

  • F07419 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found