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  3. RAFL09-84-G04

RAFL09-84-G04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09966)

full reading [+] show sequence

Nucleotide sequence: RAFL09-84-G04 - full reading 
ATTGGTTAGT TTTGAGAGCA GCAGCGTATT CTTACACAGT TCTCATATGT 
TTAACTCCAT TCACTCTCTC AAAAGGTTCC CATCTTTATC AAAAGACTTG 
CTAAAATCTT CTCTTTCTTT CTCCTTTCAT CACACTCTTG AGTCCTTGTC 
TCTGTTTTTA GTCACCTGAA GAAAAAATAT ATGGAGAACG GAGAATCTAA 
CCAAGAAAAT CTCAAATCTC TCAACCACGA CGAATCGCTT AAGAAGCCAT 
CTGCTTCCTC CGTCGTTGTA GATAGGTTAA AACGTGATGA ATGGAGCGAA 
GGAGCTGTTT CGACTTTACT CGAAGCTTAT GAGTCAAAAT GGGTTCTCAG 
AAACAGAGCC AAGCTTAAGG GACAAGACTG GGAAGACGTG GCTAAACACG 
TGTCCTCACG CGCCACTCAC ACCAAGTCAC CAAAGACTCA GACTCAGTGC 
AAGAACAAGA TCGAGTCCAT GAAGAAACGG TACCGTTCTG AGTCCGCTAC 
TGCTGATGGC TCCTCTTGGC CTCTTTATCC TCGTCTTGAT CATCTCCTAC 
GTGGAACTCA GCCTCAGCCT CAGCCTCAAG CTGTTCTGCC TCTGAATTGC 
TCTGTTCCTC TGCTCTTACT TGAGCCGCCG TTGCCTGCGG TGGCTCATCC 
GCCGCAGATT TCTTACGGAT CCAACGGCGT CGGCAAGATT CCTAAGGAAG 
ACGGATTCAA GCCGGAGAAC AAACCGGAAA AAGATGCGGA GATGGATACA 
GACAGTAGTA CGCCTGTGGT TAAAACGAAG GTGAGAGGGA AGAAAGTGAA 
GAGAAGATAT AAAGAAGAGA AGGAAGAGAT CGCCGGAAGT ATACGGTGGT 
TAGCGGAGGT GGTGATGAGA TCAGAGAGAG CAAGAATGGA GACGATGAAA 
GAGATAGAGA GAATGAGAGC TGAAGCTGAA GCTAAGAGAG GAGAATTGGA 
TTTGAAACGG ACGGAGATAA TGGCGAATAC TCAGCTAGAG ATTGCTAGAA 
TCTTTGCTGC TGCAGCTTCT TCTGGACAGA ACAAAGGTGT TGATTCTTCA 
TTAAGGATCG GAAGAAATTG AGTTCTGCTT TTTATATTGG AGACTCAAGA 
TGTTGTGTGT ACATACCAAG TGTTGTTTTG TCAAAATTTC TCAGAGAGAG 
ACCAATAATT GTTTCCTGGG GTAGATGGCG ATTTCCACAT TTCTACCAGC 
AAATGTATGC TTTTGCCATA TGAATATCAT CAATCTTTAG C

Gene models with high sequence identity

  1. AT3G54390.1 [+] show detail - sequence-specific DNA binding transcription factors
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT3G54390.1

Model type
Protein coding
Short Description
sequence-specific DNA binding transcription factors
Computational Description
sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: aspartate/glutamate/uridylate kinase family protein (TAIR:AT3G10030.1); Has 350 Blast hits to 341 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 343; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-84-G04 introduced

  • F12231 - Specific phenotypes were NOT observed.
  • F14945 - seed::increased size / seed::increased length
  • F23409 - Specific phenotypes were NOT observed.
  • F25437 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found