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  3. RAFL09-85-D20

RAFL09-85-D20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08935)

full reading [+] show sequence

Nucleotide sequence: RAFL09-85-D20 - full reading 
GGTAATCAAA CTATTAGTTA AAAAAAAATT GAACATATTA AGAAGATTAC 
AGAATAATAC ATGTAATCCT CCACTTGTCA GTTCTATAAA ATATTAATTA 
AAAAGGAAAT TCAAATTGAA GTAACTAAGA ACAGTTTTTT TAGCAGTTAA 
GCTGAATTTC AAAAAGCCAT AATCTTCGCT CTGAATCTCA TCAGCCCCGG 
TCTCCTTCTC TAGCTATATA TATACGTGTG TGATAAAGTC GTACCCTCAA 
GCCAACACAA TAACAAGAAT GGCTTCTCCT TTCTTCTTTG TGTTCCTTCT 
CTCTGCGCTT TCACTGGAGA ATACCTATGC AAGTCCCAAT TACAGAGAAG 
CACTCTCAAA GTCATTACTC TTTTTCCAAG GTCAGCGGTC TGGTCGCCTC 
CCTAGTGACC AACAACTCTC ATGGAGGTCT AGCTCTGGCC TCTCTGATGG 
CTCATCTGCT CACGTAAGAC CCTAAAACTG TATACCCATA GTCAAGTAGT 
AAAAGCATAG TAAATCCATC TGAATAACAC GGTATGAGTT GCAGGTGGAC 
TTGACCGGAG GCTACTATGA TGCTGGGGAC AATGTGAAGT TCAATTTCCC 
GATGGCGTTC ACCACAACCA TGCTTTCCTG GAGCTCTTTG GAGTACGGTA 
AGAAGATGGG ACCCGAGCTC CAGAACTCCC GTGTGGCCAT CCGTTGGGCC 
ACGGATTATC TACTGAAATG TGCCAGGGCT ACACCAGGGA AGCTTTACGT 
TGGAGTAGGA GATCCTAATG GTGACCACAA GTGCTGGGAA CGACCAGAAG 
ATATGGACAC TCCTCGCACA GTCTACTCTG TATCTCCCTC AAACCCTGGC 
TCTGATGTAG CCGCTGAAAC CGCTGCTGCT CTAGCTGCAA GCTCCATGGT 
TTTCAGGAAA GTAGATCCCA AGTACTCTCG CTTGCTCTTG GCGACAGCAA 
AGAAGGTCAT GCAGTTTGCC ATTCAATACC GAGGCGCTTA CAGTAATTCC 
CTTTCCTCTT CCGTCTGTCC GTTCTACTGC TCCTACTCTG GCTACAAGGT 
AGAGATTCAT ATGTTTACAT TGTTCCAAAA CTGAGAAAGA CATATCAATG 
AATCGTTGAA AACTTAACTA CTCTTATGAT ATCAGGACGA GCTACTATGG 
GGAGCAGCAT GGCTACATAG AGCAACCAAC GACCCGTATT ACACAAACTT 
CATAAAATCC TTAGGAGGAG GAGATCAGCC TGACATCTTC AGTTGGGACA 
ATAAATACGC CGGTGCCTAT GTTCTTCTCT CACGAGTATG TCTCAATCCT 
TAAAATTCCT AGACATAACT TAACCATTTC CTTCAATGAT TTACAAACAC 
ATTTCTTTCG CAGCGAGCAG TACTAAACAA AGACAACAAC TTTGAACTCT 
ACAAGCAAGC AGCTGAGAAT TTCATGTGTA AGATCCTTCC AAATTCTCCA 
TCCTCGTCAA CAAAGTACAC TAAAGGTAAA CTCAACACAG AGTTCTCTCC 
AAAAGCATTT CAATTACTCA AATACTAAAA GCTATAACTT TCAGGTGGAC 
TGATGTACAA ACTACCTCAG AGCAATCTAC AATACGTGAC ATCAATAACA 
TTCTTGCTCA CCACCTACGC CAAATATATG AAATCCACAA AACAAACTTT 
CAACTGCGGA AACTCACTAA TCGTCCCCAA CGCACTGATA AATCTATCGA 
AGCGACAAGT CGATTACGTC CTCGGTGTGA ATCCAATGAA GATGTCGTAC 
ATGGTTGGAT TCAGCTCCAA TTTCCCCAAA AGAATCCATC ACAGAGGTTC 
CTCTCTCCCG AGCCGAGCCG TCCGTTCCAA TTCTCTGGGC TGTAACGGCG 
GATTCCAATC ATTCAGAACA CAAAACCCTA ACCCTAACAT ATTAACCGGA 
GCAATTGTCG GAGGACCGAA TCAAAACGAT GAGTATCCAG ACCAGAGAGA 
CGATTACACC CGATCAGAGC CAGCTACATA CATCAACGCC GCATTCGTCG 
GACCATTGGC GTATTTCGCC GCCAGCCGAT CGCCGTAAAT CGCCACTCAC 
TTTAAAGTT

Gene models with high sequence identity

  1. AT1G22880.2 [+] show detail - cellulase 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Six-hairpin glycosidase-like 3.2e-11
superfamily Six-hairpin glycosidase-like 5.3e-62
superfamily Six-hairpin glycosidase-like 2.6e-11
superfamily Six-hairpin glycosidase-like 9.3e-42
PatternScan Glycoside hydrolase, family 9, active site 0
HMMPfam Glycoside hydrolase, family 9 1e-11
HMMPfam Glycoside hydrolase, family 9 5e-69
HMMPfam Glycoside hydrolase, family 9 7.5e-13
HMMPfam Glycoside hydrolase, family 9 5.4e-45
Gene3D Six-hairpin glycosidase 5.3e-08
Gene3D Six-hairpin glycosidase 3.3e-57
Gene3D Six-hairpin glycosidase 1.5e-07
Gene3D Six-hairpin glycosidase 2.3e-37
HMMPanther Glycoside hydrolase, family 9 4.2e-84
HMMPanther ENDO-1,4-BETA-GLUCANASE 4.2e-84
HMMPanther Glycoside hydrolase, family 9 7.4e-102
HMMPanther ENDO-1,4-BETA-GLUCANASE 7.4e-102
HMMPanther Glycoside hydrolase, family 9 1.2e-07
HMMPanther ENDO-1,4-BETA-GLUCANASE 1.2e-07
HMMPanther Glycoside hydrolase, family 9 2.3e-23
HMMPanther ENDO-1,4-BETA-GLUCANASE 2.3e-23

See the detailed result >

AT1G22880.2

Model type
Protein coding
Short Description
cellulase 5
Computational Description
cellulase 5 (CEL5); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 3 (TAIR:AT1G71380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-85-D20 introduced

  • F08110 - rosette leaf::abnormal / cauline leaf::epinastic / stem::abnormal

Mutant lines with disrupted or induced

1 mutant line founds