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  3. RAFL09-85-J07

RAFL09-85-J07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06870)

full reading [+] show sequence

Nucleotide sequence: RAFL09-85-J07 - full reading 
CGGCATCAAG AGAAATAGAT TTGTCATCAA AGTACACATC ACCTAAAAGT 
AAAAATAGAC AAAAGAGACC TTGTCCTCAC GCCTCTCTCT TTTTCCCGGC 
AACAACTAAC AACAACACTT CTTTACCTTT CTCTCTAAGG CAAAACCCTT 
CTCTTATGTG ACCACTCCTC CATGCATCCC TCCTCCGCCG CCGTCTCCGG 
CGAACTCACA AAACCACCAA CAGCTCCACT CCAACCACTT GTTGACCTAA 
TAACAAACGT CCTCTCCCTC CTCCTCCTCT CTTCCCTCAC CGTCCGTTCC 
TTCATCGGAC GGTGGCAAAT CCTCCGATCC AAACTCTTCA CACTAAACTC 
ATCTCTCTCT TCCTTATCCG AATCACCTCA CTGGTCACAA AATCCTCTCC 
TCCACACTCT CCTCCCTTCT CTCCTCTCAA ATCTCCAACG CCTCTCTTCA 
CTCTCCGACC AATGCTCCTC CGCTTCATTC TCCGGTGGTA AACTTCTCAT 
GCAAAGCGAC CTCGACATAG CTTCCTCTTC CCTCTCTACT CACATAAGTG 
ACCTTGACCT CCTCCTCAGA TCCGGTGTCC TCCACCAACA AAACGCCATC 
GTTTTATCAC TCCCACCACC AACATCAGAT AAAGATGACA TTGCCTTCTT 
CATCAGAGAC CTCTTCACTC GTCTCCAAAT CGGTGGAGCT GAGTTCAAAA 
AGAAATCTCT AGAATCTCTT CTTCAACTTC TCACCGATAA CGAAAAATCC 
GCAAGAATCA TAGCTAAAGA AGGTAATGTT GGTTACTTAG TAACTCTTCT 
TGATCTCCAT CACCATCCTC TAATCCGTGA GCACGCACTC GCCGTCGTCT 
CGCTGTTAAC TTCATCGAGC GCCGACTCGA GAAAGACGGT GTTCGAACAA 
GGCGGATTAG GTCCATTACT ACGATTGCTA GAAACCGGAT CTTCACCGTT 
CAAAACAAGA GCAGCAATAG CGATTGAAGC TATAACCGCC GATCCAGCAA 
CCGCTTGGGC TATCTCAGCT TACGGAGGCG TAACCGTATT AATCGAAGCT 
TGTAGATCAG GATCTAAACA AGTACAAGAA CACATCGCTG GTGCTATAAG 
CAACATCGCC GCCGTTGAAG AAATCAGAAC AACATTAGCT GAAGAAGGAG 
CTATACCGGT TCTTATCCAA CTCTTAATCT CCGGTTCATC ATCGGTACAA 
GAGAAAACCG CGAATTTCAT CTCCTTGATC TCATCTTCCG GTGAGTATTA 
CAGAGATTTG ATTGTTAGAG AAAGAGGAGG ATTACAGATT CTGATTCATT 
TAGTTCAAGA ATCATCAAAT CCCGATACGA TCGAACACTG TTTGCTTGCT 
CTCTCTCAGA TCTCTGCCAT GGAAACAGTT TCTAGGGTTT TATCTTCATC 
AACAAGGTTC ATAATCCGAT TAGGTGAATT GATAAAACAC GGAAACGTAA 
TCCTTCAACA GATCTCAACT TCTCTTTTAT CGAATTTAAC AATCAGCGAC 
GGTAACAAAC GAGCCGTCGC TGATTGTTTA AGCTCGTTGA TTCGGTTAAT 
GGAATCGCCG AAACCGGCGG GGTTACAAGA AGCGGCGACG GAGGCGGCGA 
AGTCGTTGTT GACCGTTAGA TCAAATCGGA AGGAGTTGAT GAGAGATGAG 
AAGAGTGTGA TTCGATTGGT GCAAATGTTG GATCCGAGGA ATGAGAGGAT 
GAATAATAAA GAGCTTCCGG TGATGGTTGT GACGGCGATT TTATCAGGTG 
GAAGTTATGC GGCGAGGACG AAGTTGATTG GTTTAGGAGC TGATCGTTAT 
CTTCAATCTC TGGAGGAAAT GGAAGTTCCC GGTGCTAAGA AAGCGGTTCA 
GAGACTCGCC GCCGGTAATC

Gene models with high sequence identity

  1. AT2G05812.1 [+] show detail
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Gene3D Armadillo-like helical 1.8e-46
HMMSmart Armadillo 82
HMMSmart Armadillo 5.1
HMMSmart Armadillo 110
HMMSmart Armadillo 0.13
HMMSmart Armadillo 0.057
HMMSmart Armadillo 280
superfamily Armadillo-type fold 1.3e-54
HMMPanther ANKYRIN-REPEAT-ARM DOMAIN PROTEIN 4.4e-13
HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 4.4e-13
HMMPfam Armadillo 6.1e-05
HMMPfam Armadillo 0.0001

See the detailed result >

AT2G05812.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT2G05810
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-85-J07 introduced

  • F01508 - Specific phenotypes were NOT observed.
  • F15821 - Specific phenotypes were NOT observed.
  • F20204 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found