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  3. RAFL09-86-A04

RAFL09-86-A04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17872)

full reading [+] show sequence

Nucleotide sequence: RAFL09-86-A04 - full reading 
GAATGGAGGA GCCATTTCTT CTGAGAGACG AGCTTCTAGT CCCTTCTCAA 
GTCACATGGC ATACAAATCC ATTAACCGTC GAGCTAAAGA GAGTGAGCCG 
CTTGGCCGCT CCTATGGCCA CTGTGACCAT TGCTCAGTAC TTATTGCCTG 
TCATCTCGGT CATGGTCGCT GGCCACAACG GCGAGCTCCA GCTCTCCGGT 
GTCGCTCTTG CAAACTCCTT CACAAACGTC ACCGGTTTTA GCATTATGTG 
TGGATTAGTG GGTGCACTTG AAACTCTTTG TGGCCAAGCT TATGGAGCCA 
AACAATATGA AAAAATCGGA ACTTACGCAT ACTCTGCTAT TGCTTCCAAC 
ATACCAATTT GTTTCCTCAT ATCAATTCTC TGGCTTTACA TCGAAAAGAT 
CTTGATTTCT CTCGGACAAG ACCCTGAAAT TTCAAGAATC GCTGGCTCCT 
ACGCCTTTTG GCTTATACCG GCTTTATTTG GCCAAGCGAT TGTCATACCA 
CTGTCCCGGT TTCTGCTAAC ACAAGGGTTG GTTATTCCTC TGCTCTTCAC 
TGCCGTGACC ACCCTTTTGT TCCACGTTTT GGTTTGTTGG ACTTTGGTTT 
TCTTGTTTGG TCTGGGATGT AATGGACCTG CCATGGCTAC AAGTGTGTCT 
TTCTGGTTTT ACGCTGTGAT ACTCTCATGT TATGTGAGAT TCTCCAGCTC 
TTGCGAGAAG ACTCGCGGAT TTGTATCCCG AGATTTTGTG TCTTCTATCA 
AGCAGTTCTT CCAATACGGA ATCCCATCAG CTGCAATGAT TTGTCTAGAA 
TGGTGGCTAT TTGAGATACT CATACTCTGC TCAGGTCTTC TCCCTAACCC 
GAAACTCGAG ACCTCTGTTC TTTCAATTTG TCTTACAATA GAAACTTTGC 
ACTATGTGAT TTCAGCTGGA GTCGCCGCGG CTGTGAGCAC ACGTGTATCA 
AACAATTTGG GAGCTGGGAA TCCTCAAGTT GCTAGGGTTT CAGTATTAGC 
AGGGCTTTGT CTCTGGATAG TAGAGTCAGC TTTCTTTAGC ATACTTCTAT 
TCACCTGCAG GAACATCATA GGATACGCAT TCAGCAACAG CAAAGAAGTT 
TTGGACTATG TAGCTGACCT AACTCCTTTG CTCTGCCTCT CCTTTATCCT 
CGACGGCTTC ACAGCAGTTC TAAATGGAGT TGCTAGGGGA AGTGGTTGGC 
AACACATTGG AGCTTGGAAC AATACTGTTT CTTATTATCT TGTAGGAGCT 
CCTGTTGGAA TTTACTTAGC TTTCAGTCGT GAGTTGAACG GAAAAGGACT 
GTGGTGCGGT GTTGTGGTTG GATCTACTGT GCAAGCCACT ATACTGGCTA 
TTGTCACAGC TTCCATAAAT TGGAAGGAAC AGGCTGAGAA GGCAAGGAAG 
AGAATTGTCT CAACTGAAAA CAGATTGGCT TAAACAAATG ATGTTTCTCA 
TAGTTATCTC AAACTATTTG TATGCCTTAT GCAAATTTTT TTTGAAAGAT 
GTTTATAAAA GAGGGTCATT TGTTTTCTTA AAATAAAAA

Gene models with high sequence identity

  1. AT2G04040.1 [+] show detail - MATE efflux family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Multi antimicrobial extrusion protein MatE 7.29994178862692e-83
HMMPanther MATE family transporter related protein 0
HMMPfam Multi antimicrobial extrusion protein MatE 1.3e-21
HMMPfam Multi antimicrobial extrusion protein MatE 2.2e-30
HMMPanther Multi antimicrobial extrusion protein MatE 0

See the detailed result >

AT2G04040.1

Model type
Protein coding
Short Description
MATE efflux family protein
Curator Summary
AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.
Computational Description
TX1; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04080.1); Has 9657 Blast hits to 9581 proteins in 1940 species: Archae - 182; Bacteria - 6693; Metazoa - 146; Fungi - 326; Plants - 1322; Viruses - 0; Other Eukaryotes - 988 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-86-A04 introduced

  • F00609 - Specific phenotypes were NOT observed.
  • F05737 - seed::increased size / seed::increased length
  • F11049 - Specific phenotypes were NOT observed.
  • F11321 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found