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Full-length cDNAs
RAFL09-86-D02

RAFL09-86-D02

RIKEN Arabidopsis Full-length cDNAs

AGTGCGACTT TGCCTCTTTT CAATGCCCAA TTTCTTGAGA TTCTGGCTGT 
TCTGCATCCA AATATTAAAC AATCAATTCC TTTTATAAAA AGCAAAAGAC 
AGAAATATTT ATTATTAAGC TAAAGAATTG ATCAAAAAAC TCGATTCACT 
TTTCTCAAAA ACCCGAATAT AATCTCATTC CCAATAGCTT CCACTTCCAT 
CGAGAGATTT TCTTTCTTTG TTTTTTTCTG TGATTTTCTC CAATGGCTAA 
CTCCAAGAAG CAAGCATGGT TTTTTTATAC CACAGGCTTA CCAAGTGACA 
TAGAAATCGA AGTTGATGAT ATAACATTTC ATCTTCATAA GTTTCCTCTA 
ATGTCAAAAA GCAAAAAACT TCACCAACTA ATAACAGAGC AAGAACAGAG 
TAAAGTTTAT TCTCACATCA AGCTCGAGAA TTTTCCAGGA GGTTCAGAGA 
TTTTCGAGAT GGTGATAAAG ATAAGCTACG GTTTCAAAGT CGACATCTCT 
GTTTCCACAG CTGTTCCACT CCGTTGCGCC GCCGAGTATC TAGAAATGAC 
GGAAGAGTAC TCACCGGAGA ATCTCATTTC AAAAACAGAG AAGTTTCTTT 
CAGAGTTCGT CTTCACTAAC GTACAAGAAT CCATCAAAGC GTTGAAAGCT 
TGTGAATCAG TCTCGTCTTT AGCTGAATCA CTCTGTATAA CGGAACAGTG 
TATAGACTCC ATCGTCTTCC AAGCTTCCTC AACCGATCCG TCGTCGTTTT 
ACGGTTGGCC AATAAACAAC GGAGGTATAT TCACCGTTGA CCGGAAGAAA 
CAGAGCAAAG ATTCGAAAAC AGAGCTTTGG TTCGAAGATC TAACGGAGTT 
GAGTTTTCCA ATCTTCAGAC GTGTGATCTT ATCCATGAAG TCGAGTGTCC 
TGAGTCCTGA GATTGTAGAG AGATCTCTAC TTACTTACGC GAAGAAACAC 
ATTCCAGGAA TCTCGCGTTC ATCGTCAGCA TCTTCATCTT CTTCTTCTTC 
TTCCACCACC ATAGCTTCCG AGAATCAACA AAGAGAATTA TTAGAGACGA 
TAACTTCAGA TCTTCCATTA ACTGCGACGA CTACGAGATC TCTCTTCGGT 
TTGTTACGAG CCGCGATCAT TCTCAACGCC TCCGAGAATT GCAGGAAGTT 
TCTAGAGAAA AAAATCGGAT CGAATCTTGA GAAAGCTACG CTTGATGATC 
TTCTCATTCC AAGTTACTCG TATCTCAACG AAACGTTATA CGATATTGAT 
TTGGTGGAGA GACTCTTACG TCGTTTTCTC GAAAACGTCG CCGTGTCGTC 
GTCGTCATTG ACGGTGGTTG GGAGATTGAT CGACGGAGTT CTCGGTGAAA 
TTGCATCGGA CGCTAATCTT AAACCGGAAC AGTTTTATAA TCTGGCGGTT 
TTGCTTCCGG TTCAAGCACG GGTTTACGAT GATGGACTAT ACAGAGCCGT 
CGATATATAT TTCAAGACTC ATTCATGGAT ATTGGAGGAA GAGAAGGAGA 
AGATTTGTAG CGTGATGGAT TGTAGAAAAC TGACTGTTGA AGGATGCACA 
CACGCGGCAC AAAACGAGCG TTTACCACTA CGAGCCGTCG TACAAGTTCT 
GTTTTTGGAG CAGCTACAGC TCCGGCAAGT AATCACTGGG ACTTTACTGA 
CGGAGGAAGA CGGTGATAAA ACGGTGGTGG ACTTGGGTAG ATGGAAGGAA 
GCGGTGAAGG AGAATCAGGT GCTTCGTTTG GATATGGATA CGATGAGGAC 
ACGAGTGAAC CAGCTAGAGA AAGAATGCTT GTACTTGAAG AAAGTGATCG 
CGAAGATCGA CAAAGAAAGT TTGTTGAAGG CGAAGCATGG GGCGGGGAAA 
TGGTCAATCG GGAAGAAGTT CGGATGCAAA TTTTCGGCTC AAGTTTGTGG 
TTCACAGGAG GCAACGATGG TCGATAGAAG ATCACGACGT TTTCTTAGTT 
AGTACATAAA TCAGAATCAT CTTGTGCTTC TAAAAATTGT ATTTTTACTT 
CTTCTGTATA TCTTAAAGAA AAAGATTGAT ACTTTAGATT GAATGGAACT 
CTAAAACACA CCCTGATGGA CTTGTTATTC AGAGAATCAT AGTATAATGA 
TTTAGAGATT ATGAATGTAA ATTTGTAAAA AC

Gene models with high sequence identity

AT3G50840.1 [+] show detail - Phototropic-responsive NPH3 family protein
E-value: 0; Score: 99.95

InterPro Scan Digest

Program	Description	E-value
Coil	coiled-coil	0
HMMPfam	NPH3	8.3e-83
HMMPfam	BTB/POZ	4.8e-07
superfamily	BTB/POZ fold	8.4e-15
ProfileScan	BTB/POZ-like	9.806
Gene3D	BTB/POZ fold	1.2e-05
HMMSmart	BTB/POZ-like	0.00023

See the detailed result >

AT3G50840.1

Model type: Protein coding
Short Description: Phototropic-responsive NPH3 family protein
Computational Description: Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ (InterPro:IPR013069), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT5G66560.1); Has 881 Blast hits to 860 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 3; Plants - 864; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-86-D02 introduced

F01304 - seed::decreased size
F13617 - Specific phenotypes were NOT observed.
F16429 - Specific phenotypes were NOT observed.
F16925 - seed::increased length
F18303 - seed::increased size / seed::increased length
F28351 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found