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  3. RAFL09-86-D05

RAFL09-86-D05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17874)

full reading [+] show sequence

Nucleotide sequence: RAFL09-86-D05 - full reading 
CCGACTTTCT CAAACAATCT CTCTCTCTGG CATTTGGATT TGGAAGTGCT 
TTTTGTATAT ATATCCAACA AAGGAATCAG ATCGGAGATG TCGGATGTTT 
CCGGTGACGG AGATTTATCG GCGACGGTTA CTGAACATGA AGTAACTCCA 
CAACCGCCGG TTTCTTCGGC GACGTATCCG TCATTAACGG TGTCGGCGTC 
TTACAAAGAG AGCAGCGGAG GTAAAAGCTC GTCGAAGAGG AGACCAATAA 
GGCCGAGTTT CGACGCTGCG GCTGATAATG AGTTTATTAC TTTGCTTCAT 
GGCTCGGATC CAGTGAAAGT GGAGCTTAAT CGACTAGAGA ATGAAGTTAG 
AGATAAGGAT CGGGAGTTAG GAGAAGCAAA CGCTGAGATC AAAGCGCTTA 
GGTTGTCTGA GAGACAAAGA GAGAAAGCTG TTGAAGAGCT TACTGAGGAG 
CTTACTAAGT TGGATGAGAA GCTCAAGTTG ACTGAATCCA TTCTCGAAAG 
CAAAAATCTA GAAATCAAGA AAATCAATGA GGAAAAGAAA GCATCAATGG 
CTGCTCAGTT TGCTGCTGAA GCCACTTTAA GAAGAGTCCA TGCTGCTCAA 
AAGGATGATG ACATGCCTCC TATTGAAGCC ATCCTTGCTC CATTAGAAGC 
TGAACTTAAG CTTGCACGAT CAGAGATTGG AAAGCTTCAA GAAGATAACA 
GGGCTTTGGA CCGTCTGACT AAATCAAAGG AAGCTGCCTT ACTTGAAGCT 
GAGAGGACCG TTGAAGCTGC CATGGCAAAA GCCGCTATGG TTGATGATCT 
TCAGAATAAG AACCAGGAGC TAATGAAGCA AATTGAAATC TGTCAGGAAG 
AAAACAAAAT TCTAGATAGA ATGCATAGGC AGAAGGTTGC TGAAGTGGAA 
AAGCTTACTC AGACAGTACG AGAGCTAGAA GAGGCTGTTC TTGCAGGTGG 
TGCTGCTGCA AATGCCGTGA GGGATTACCA GCGGAAATTT CAAGAGATGA 
ATGAAGAGCG GAAAACTCTT GACCGGGAGC TTGCACGTGC AAAGGTTACA 
GCAAACAGAG TTGCCACTGT GGTAGCAAAT GAGTGGAAAG ATGGTAATGA 
TAAAGTGATG CCTGTGAAGC AATGGCTCGA AGAACGAAGG TTTCTACAGG 
GAGAAATGCA GCAACTTCGT GATAAGCTCG CCATAACAGA CCGGGCTGCA 
AAATCCGAGG CACAGTTAAA AGAGAAGTTT CAACTGCGGC TTAAAGTGCT 
TGAGGAGACA CTTCGAGGAA CTTCAAGCAG CGCCACCAGG AACACACCCG 
AGGCAAGAAG CATGAGTAAT GGACCTTCTC GCAGGCAGTC GCTTGGTGGA 
GCTGAAAACT TACAAAAATT TACATCAAAC GGTGCTTTAT CAAAGAAAGC 
TCCAGCATCT CAGATGAGGC ATTCATTGTC TATTAATTCA ACTTCGGTGT 
TGAAGAATGC TAAAGGAACA TCTAAGTCAT TTGATGGAGG CACAAGATCC 
GTGGATAGAG GCAAAGCACT TTTAAACGGA CCTGGGAATT ATTCCTTCAA 
CAAGGCTACT GATGACTCTA AGGAAGCAGA GTCAGGTAAT GGGTGGAAAG 
AAAATTCAGA GGAGAAGCCA CAAAGTGAAG ACCCTGAAGC AGCAACTGAG 
GACAGTGTCC CTGGTGTTTT GTATGATTTA CTACAGAAAG AAGTAGTTTC 
TTTGAGGAAA GCCTCTAATG AAAAGGATCA AAGCCTCAAA GACAAAGATG 
ATGCCATCGA GATGCTAGCG AAGAAGGTGG AAACATTAAC AAAGGCAATG 
GAGGTTGAAG CAAAGAAGAT GAGACGGGAA GTAGCTGCAA TGGAAAAAGA 
AGTTGCTGCA ATGCGTGTGG AGAAAGATCA GGACGCCAGA GCCAAAAGGT 
TTTCAAATAG CAAGAGCCCA TCCAACACCG CCCAGATTCT TGCGGGAAGA 
GCTGCTGGAC GAAGTGGCGG GTTAACGAAG AGTACCCAGT GAAGGGAGAT 
TCAAGAAAAT AACAAGTAAA AGAATGTCCT TGGCTCTTGT TATTCAGCTG 
TTTTAACCTT ATATCATGGC TTTTACTTTG TTTTTGTTTA CCTCATGTGA 
TTGGTTGTAT CACCATATAT AACTTAGCAT GCTGATAATC CCATCCTCAC 
ACCTATAACC TAGTAAAAAG ATAAGAAAGA GAGTTTGTGA CATAGATTTG 
GTGTTAAAGT GGTTAGAGGG AGGAGAAGAA AAGCCGAGGG AGAGAGTGAG 
AGATGTTGAC ATTTTGGCTA ACATTTTCAT CTCTCTTTTC GGGAGTTAGT 
TTGTTTTTGG TGTATAGGTT TGGTATTTGG CTTCTCTAGA GCTTGTGTAC 
CTCTGATTCC TTTTATTTGT TTGTTACTCT ATTGCACTCT TTGTGTGATT 
TATTCGTTTG TATTTTGGGT TTGCTGATAT ATAATATATG ATTTGATATA 
TTTGAACAAA AAAA

Gene models with high sequence identity

  1. AT1G24764.1 [+] show detail - microtubule-associated proteins 70-2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam Myosin II heavy chain-like 1.1e-203

See the detailed result >

AT1G24764.1

Model type
Protein coding
Short Description
microtubule-associated proteins 70-2
Curator Summary
Member of the MAP70 protein family.
Computational Description
microtubule-associated proteins 70-2 (MAP70-2); FUNCTIONS IN: microtubule binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: microtubule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myosin II heavy chain-like (InterPro:IPR009768); BEST Arabidopsis thaliana protein match is: microtubule-associated proteins 70-1 (TAIR:AT1G68060.1); Has 48419 Blast hits to 29383 proteins in 2175 species: Archae - 681; Bacteria - 6937; Metazoa - 23825; Fungi - 4071; Plants - 3202; Viruses - 118; Other Eukaryotes - 9585 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-86-D05 introduced

  • F12047 - Specific phenotypes were NOT observed.
  • F17404 - seed::increased size / seed::increased length
  • F29906 - stem::increased thickness / cauline leaf::present in fewer numbers in organism / whole plant::decreased height / fruit::decreased length / fruit::increased thickness / stem::present in fewer numbers in organism / rosette leaf::dark green / rosette leaf::increased width / stem::increased thickness / fruit::decreased length / fruit::increased thickness / stem::present in fewer numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

11 mutant lines found