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  3. RAFL09-86-L04

RAFL09-86-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06895)

full reading [+] show sequence

Nucleotide sequence: RAFL09-86-L04 - full reading 
CTTCTTCTTA GTTTGATTCA AAAAATCTCC TTCCTCTTCT TACTTTATCT 
CGTATTATCC ATTAATCCTA AACCCTTTAG TCTCTCCATC TTCCGCTTCA 
ACAATCAGAA TTTGGGTTTG GCGAAAGATG CTAACTTTGA AAGTGAGACT 
AATCGTTTGA GTAAAAAACA TGCGAATTTT GTGTGATGCT TGTGAGAGCG 
CCGCCGCTAT CGTCTTTTGC GCCGCCGACG AAGCTGCCCT CTGTTGCTCC 
TGCGACGAAA AAGTTCATAA GTGCAACAAG CTGGCTAGTC GGCATCTTCG 
TGTAGGCTTA GCTGATCCGA GTAATGCACC AAGCTGTGAC ATATGCGAAA 
ATGCACCCGC ATTCTTTTAC TGTGAGATAG ATGGTAGTTC CCTTTGTCTA 
CAATGTGATA TGGTGGTACA TGTTGGTGGG AAGAGAACAC ATAGGCGGTT 
TCTATTACTG AGACAGAGAA TTGAGTTTCC AGGCGATAAG CCTAATCATG 
CTGACCAACT GGGACTACGG TGTCAAAAGG CTTCCTCTGG TCGTGGTCAA 
GAATCAAATG GGAATGGTGA TCATGATCAT AATATGATCG ATCTTAACTC 
CAATCCTCAA AGAGTACACG AGCCTGGATC ACATAACCAA GAGGAGGGTA 
TTGATGTAAA TAACGCAAAC AATCACGAGC ATGAATAGTG ATCGCAGATA 
CACAAGATCA AGTAAGAACC TATGCAAGAA CAGTATCTTT ACAGGGAAAT 
GTCTTATTTT GTTTTGAAGA AATTAGCTTA GAGGAAACAA ATATGTTGTT 
TTCTGAATTT CTTCTCTTTT CCTTTCTTTT GTGAAATGAT CAATTAGTGG 
ATAACGATTC TTCAGAGTTA TATCTCAAAC

Gene models with high sequence identity

  1. AT2G21320.1 [+] show detail - B-box zinc finger family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, B-box 10.239
ProfileScan Zinc finger, B-box 9.3
HMMPfam Zinc finger, B-box 1.2e-06
HMMSmart Zinc finger, B-box 2.6e-07
HMMSmart Zinc finger, B-box 1.8e-13

See the detailed result >

AT2G21320.1

Model type
Protein coding
Short Description
B-box zinc finger family protein
Computational Description
B-box zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger family protein (TAIR:AT4G38960.1); Has 1943 Blast hits to 1369 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-86-L04 introduced

  • F22121 - rosette leaf::decreased size / rosette leaf::present in greater numbers in organism
  • F26703 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found