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  3. RAFL09-86-P10

RAFL09-86-P10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17878)

full reading [+] show sequence

Nucleotide sequence: RAFL09-86-P10 - full reading
CCCGAATTTT TACTCTCCTC CTTCACGTCT TTTCCTCTTA ATTTTTTCTA 
GGAAAATTCT CAAATCCATC TCCGCGATAC GAACAGAGAG AAGAAGACTT
AGAAAAATGG CTGTTCAACC TACAAGAATA GGTCTAGCTG GACTTGCTGT
GATGGGTCAG AACCTAGCTC TCAACATTGC AGAGAAAGGC TTCCCAATCT
CTGTTTACAA CAGAACTACT TCCAAAGTTG ATGAGACCGT CGAACGAGCC
AAAAAGGAAG GCAATCTTCC TCTTTACGGC TTCCATGACC CCGAGTCTTT
TGTCAAGTCC ATTCAGAAGC CACGCGTTAT TATCATGCTT GTTAAGGCTG
GTTCTCCCGT TGACCAGACC ATCAAGACCC TCTCTGCTTA TTTGGAGAAA
GGTGACTGTA TTGTCGATGG TGGTAATGAA TGGTATGAGA ACACTGAGAG
GAGAGAAAAA GCCGTGGCGG AGAACGGTTT CCTCTACCTT GGAATGGGAG
TTTCTGGTGG TGAAGAAGGT GCTCGTAATG GCCCATCTAT GATGCCTGGA
GGCTCTTATG AAGCCTACAA GAATATCGAA GACATTGTTC TCAAGGTTGC
TGCTCAGGTT AGGGATAGTG GTCCCTGTGT GACTTATATC GGTAAGGGCG
GGTCTGGAAA CTTTGTCAAA ATGGTCCACA ATGGGATCGA GTACGGTGAT
ATGCAGCTGA TTGCAGAAGC TTATGACGTC CTCAAGTCTG TTGGTAAATT
ATCGAATGAG GAGCTTCACA GTGTCTTCTC TGACTGGAAC AAAGGTGAGC
TTGAGAGTTT CTTGGTAGAG ATCACAGCAG ATATTTTCGG GATCAAGGAC
GATAAGGGAG ATGGGCATTT GGTTGACAAG GTCTTGGACA AAACCGGCAT
GAAAGGCACA GGAAAGTGGA CCGTGCAGCA AGCTGCTGAG CTATCTGTTC
CTGCTCCCAC CATTGAATCC TCTCTTGATG CGAGGTTCCT TAGCGGGCTT
AAAGATGAAC GTGTGCAAGC AGCTAAAGTC TTCAAGGCAG GTGGGTTTGG
AGATATCTTG ACCGATCAGA AAGTTGACAA GAAACAGCTA GTCGATGACG
TGAGGAAGGC TCTTTACGCA TCCAAAATCT GCAGCTACGC ACAAGGCATG
AACCTTATCC GTGCCAAGAG CATAGAAAAG GGGTGGGGAT TGAAGCTAGG
TGAGTTAGCT AGAATCTGGA AAGGAGGCTG CATCATCAGA GCAATCTTCC
TAGACAGGAT CAAGCAAGCT TATGACAGGA ACGCAGAGCT AGCTAACCTC
TTGGTGGATC CAGAGTTTGC GAAAGAGATA ATCGAGAGAC AGTCCGCGTG
GAGAAGAGTC GTCTGCTTAG CTATCAACTC GGGTATCAGC ACACCGGGTA
TGTCTGCGAG TCTAGCCTAC TTTGATTCTT ACAGGAGAGA GAGATTGCCG
GCAAATCTAG TCCAAGCACA GAGAGACTAC TTTGGTGCTC ATACATATGA
AAGGACTGAT GTGGAAGGAT CTTTCCACAC CGAGTGGTTC AAGATTGCAA
GACAATCTAA GATCTGAGAT CTCTCATCCT CTTGTATTCT TCTTCTCCTT
CAATAATAAG TTCCACACAG TATGTTTCTT TCCTCAATGT GTGAGATACC
TTGGCTTATT TATGATTGTA GAACTGAGTT TCTCGAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G02360.1 [+] show detail - 6-phosphogluconate dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 6-PHOSPHOGLUCONATE DEHYDROGENASE 2.7e-190
Gene3D NAD(P)-binding domain 1.6e-54
Gene3D Dehydrogenase, multihelical 1.1e-99
Gene3D Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension 1.2e-09
HMMPfam 6-phosphogluconate dehydrogenase, C-terminal 1.2e-132
HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 5.8e-48
superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 2.8e-121
superfamily NAD(P)-binding domain 6e-54
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
HMMTigr 6-phosphogluconate dehydrogenase, decarboxylating 1.3e-268

See the detailed result >

AT3G02360.1

Model type
Protein coding
Short Description
6-phosphogluconate dehydrogenase family protein
Computational Description
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12208 Blast hits to 12120 proteins in 2600 species: Archae - 108; Bacteria - 8004; Metazoa - 655; Fungi - 226; Plants - 316; Viruses - 4; Other Eukaryotes - 2895 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-86-P10 introduced

  • F11636 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / stem::abnormal / cauline leaf::dark green / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / fruit::decreased length

Mutant lines with disrupted or induced

1 mutant line founds