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  3. RAFL09-86-P10

RAFL09-86-P10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17878)

full reading [+] show sequence

Nucleotide sequence: RAFL09-86-P10 - full reading 
CCCGAATTTT TACTCTCCTC CTTCACGTCT TTTCCTCTTA ATTTTTTCTA 
GGAAAATTCT CAAATCCATC TCCGCGATAC GAACAGAGAG AAGAAGACTT 
AGAAAAATGG CTGTTCAACC TACAAGAATA GGTCTAGCTG GACTTGCTGT 
GATGGGTCAG AACCTAGCTC TCAACATTGC AGAGAAAGGC TTCCCAATCT 
CTGTTTACAA CAGAACTACT TCCAAAGTTG ATGAGACCGT CGAACGAGCC 
AAAAAGGAAG GCAATCTTCC TCTTTACGGC TTCCATGACC CCGAGTCTTT 
TGTCAAGTCC ATTCAGAAGC CACGCGTTAT TATCATGCTT GTTAAGGCTG 
GTTCTCCCGT TGACCAGACC ATCAAGACCC TCTCTGCTTA TTTGGAGAAA 
GGTGACTGTA TTGTCGATGG TGGTAATGAA TGGTATGAGA ACACTGAGAG 
GAGAGAAAAA GCCGTGGCGG AGAACGGTTT CCTCTACCTT GGAATGGGAG 
TTTCTGGTGG TGAAGAAGGT GCTCGTAATG GCCCATCTAT GATGCCTGGA 
GGCTCTTATG AAGCCTACAA GAATATCGAA GACATTGTTC TCAAGGTTGC 
TGCTCAGGTT AGGGATAGTG GTCCCTGTGT GACTTATATC GGTAAGGGCG 
GGTCTGGAAA CTTTGTCAAA ATGGTCCACA ATGGGATCGA GTACGGTGAT 
ATGCAGCTGA TTGCAGAAGC TTATGACGTC CTCAAGTCTG TTGGTAAATT 
ATCGAATGAG GAGCTTCACA GTGTCTTCTC TGACTGGAAC AAAGGTGAGC 
TTGAGAGTTT CTTGGTAGAG ATCACAGCAG ATATTTTCGG GATCAAGGAC 
GATAAGGGAG ATGGGCATTT GGTTGACAAG GTCTTGGACA AAACCGGCAT 
GAAAGGCACA GGAAAGTGGA CCGTGCAGCA AGCTGCTGAG CTATCTGTTC 
CTGCTCCCAC CATTGAATCC TCTCTTGATG CGAGGTTCCT TAGCGGGCTT 
AAAGATGAAC GTGTGCAAGC AGCTAAAGTC TTCAAGGCAG GTGGGTTTGG 
AGATATCTTG ACCGATCAGA AAGTTGACAA GAAACAGCTA GTCGATGACG 
TGAGGAAGGC TCTTTACGCA TCCAAAATCT GCAGCTACGC ACAAGGCATG 
AACCTTATCC GTGCCAAGAG CATAGAAAAG GGGTGGGGAT TGAAGCTAGG 
TGAGTTAGCT AGAATCTGGA AAGGAGGCTG CATCATCAGA GCAATCTTCC 
TAGACAGGAT CAAGCAAGCT TATGACAGGA ACGCAGAGCT AGCTAACCTC 
TTGGTGGATC CAGAGTTTGC GAAAGAGATA ATCGAGAGAC AGTCCGCGTG 
GAGAAGAGTC GTCTGCTTAG CTATCAACTC GGGTATCAGC ACACCGGGTA 
TGTCTGCGAG TCTAGCCTAC TTTGATTCTT ACAGGAGAGA GAGATTGCCG 
GCAAATCTAG TCCAAGCACA GAGAGACTAC TTTGGTGCTC ATACATATGA 
AAGGACTGAT GTGGAAGGAT CTTTCCACAC CGAGTGGTTC AAGATTGCAA 
GACAATCTAA GATCTGAGAT CTCTCATCCT CTTGTATTCT TCTTCTCCTT 
CAATAATAAG TTCCACACAG TATGTTTCTT TCCTCAATGT GTGAGATACC 
TTGGCTTATT TATGATTGTA GAACTGAGTT TCTCGAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G02360.1 [+] show detail - 6-phosphogluconate dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 6-PHOSPHOGLUCONATE DEHYDROGENASE 2.7e-190
Gene3D NAD(P)-binding domain 1.6e-54
Gene3D Dehydrogenase, multihelical 1.1e-99
Gene3D Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension 0.0000000012
HMMPfam 6-phosphogluconate dehydrogenase, C-terminal 1.2e-132
HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 5.8e-48
superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 2.8e-121
superfamily NAD(P)-binding domain 6e-54
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
FPrintScan 6-phosphogluconate dehydrogenase 2.5e-81
HMMTigr 6-phosphogluconate dehydrogenase, decarboxylating 1.3e-268

See the detailed result >

AT3G02360.1

Model type
Protein coding
Short Description
6-phosphogluconate dehydrogenase family protein
Computational Description
6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12208 Blast hits to 12120 proteins in 2600 species: Archae - 108; Bacteria - 8004; Metazoa - 655; Fungi - 226; Plants - 316; Viruses - 4; Other Eukaryotes - 2895 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-86-P10 introduced

  • F11636 - rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / stem::abnormal / cauline leaf::dark green / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / fruit::decreased length

Mutant lines with disrupted or induced

1 mutant line founds