1. Home
  2. Full-length cDNAs
  3. RAFL09-87-D23

RAFL09-87-D23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09972)

full reading [+] show sequence

Nucleotide sequence: RAFL09-87-D23 - full reading 
AATTAATGGA TCTAAATTTC TTTCACTTGT CCACTATCTC TCTACCAAAT 
TTGTCATCTT CGTCCCCACT AATCACTCTC GCAAGTGAGA AAATAACAAA 
GCTAGCTAGA AATGGAACAG TATGAGTTTC TTGAGCAAAT TGGAAAAGGA 
TCTTTTGGGT CAGCTCTTTT AGTGAGACAT AAGCATGAGA AGAAAAAATA 
TGTATTGAAA AAGATCCGTC TTGCCCGGCA AACTCAAAGG ACCAGACGAT 
CTGCACATCA AGAGATGGAG CTTATCTCGA AAATGCGTCA TCCATTTATC 
GTGGAATACA AAGACTCTTG GGTGGAAAAG GCTTGCTATG TGTGCATTGT 
CATAGGTTAT TGTGAAGGAG GAGACATGGC ACAAGCTATC AAGAAATCCA 
ATGGTGTGCA TTTTCAGGAA GAGAAACTGT GCAAGTGGCT TGTTCAGCTC 
CTGATGGGCC TTGAGTACTT ACATTCTAAC CATATTCTTC ATCGTGATGT 
CAAGTGTTCT AACATATTCT TGACCAAAGA GCAAGATATA CGCCTTGGTG 
ATTTTGGGTT AGCCAAGATT CTAACATCCG ACGATCTCAC ATCCTCTGTT 
GTCGGGACTC CCAGCTATAT GTGCCCTGAG CTTTTAGCTG ATATACCTTA 
TGGTTCCAAA TCTGACATTT GGTCTTTAGG GTGCTGTATA TATGAAATGG 
CTTATCTTAA GCCGGCATTT AAAGCATTTG ATATGCAAGC ACTGATTAAT 
AAGATAAACA AGACGATTGT GTCTCCGCTC CCTGCCAAAT ATTCTGGTCC 
ATTGTAAGTT TTGTTTTGCT TGTACCTTCA TATATATCTT TGTTTGTTTA 
CAGTAATATT TTCTGAATCT TGTTTTTAGC CGAGGTCTCG TCAAAAGCAT 
GCTGCGGAAA AACCCAGAAG TTCGGCCATC TGCCTCAGAT TTACTTAGAC 
ATCCACATCT TCAGCCTTAT GTTCTGGATG TCAAGCTTAG GCTCAATAAT 
CTTAGACGCA AAACATTACC GCCTGAGTTG CCGAGTTCCA AGAGGATTAT 
GAAGAAAGCT CATTTTTCTG AACCAGCTGT CACTTGTCCA GCCTTTGGAG 
AACGACAACA TAGGTCTCTC TGGAATGACA GAGCTCTGAA TCCAGAAGCT 
GAAGAAGACA CTGCATCTTC TATTAAATGT ATTAGTCGCA GAATTTCAGA 
TTTATCGATT GAGAGCAGCA GTAAAGGAAC ATTGATATGT AAGCAAGTTT 
CTTCAAGTGC ATGTAAGGTC TCAAAGTATC CTCTTGCAAA ATCTTCAGTG 
ACATCCAGAA GAATCATGGA AACTGGACGG AGATCCGACC ACTTGCATCC 
GGTTTCAGGT GGTGGTACCA CCAGCAAGAT AATTCCATCA GCTCGCCGGA 
CTTCTCTACC ACTCACGAAA AGAGCTACAA ACCAAGAAGT TGCAGCTTAC 
AACCCAATAG TTGGGATCTT GCAGAATGTC AAGTCTCCAG AATATTCCAT 
TAATGAGCCA CAAGTTGATA AGATTGCCAT TTTTCCATTA GCTCCATATG 
AACAAGACAT CTTCTTTACT CCCATGCAAA GGAAAACATC GTCTAAAAGC 
TCCTCTGTCT CAGACCGCTC TATAACAAAA GACAAATGCA CAGTTCAAAC 
TCATACGACG TGGCAGGGAA TCCAACTCAA CATGGTAGAT AACATAAGCG 
ACGGGTCATC ATCATCTGAT CAGAATGCAA CAGCTGGTGC ATCAAGCCAC 
ACCACATCCT CTAGTTCAAG AAGATGTCGG TTTGACCCAT CATCGTATCG 
TCAACGGGCT GATGCTTTGG AGGGGTTGCT TGAGTTTAGT GCCAGATTGT 
TACAAGAAGG GAGATATGAT GAACTCAATG TATTGCTTAA GCCTTTTGGT 
CCAGGAAAGG TGTCTCCCAG AGAAACCGCG ATATGGATCG CAAAGAGCTT 
GAAGGAGAAT CGAGACAAGA CCAAAATGGT AGATCTAAAT GTTTCTAGAG 
AGATACCACA TGTGGGTCTC CTCTGACAGG CTCCACATTG TCATAACGTT 
CGGTTTAGTT CGGTTTTAGC AAAAAGAGAG AAGAGAAAGA ACTGGGTTAT 
GCTTCTGGGA TTTGCAGGAG CTAGAGTTGG TTTAGGTTTA GTTTGATGGC 
TGACACTTTT AAAAGATGAG TAACAGTATT AGTAGGTTGC GTTGGATGGT 
CTTTGCTTTA GTCGAACCGG TAGCTTTGCA TTTGTAATCT GTACACTTGA 
TAGTGTTAAC ACCTTTTATA ACTTGTATTA CTATAGACTT CATG

Gene models with high sequence identity

  1. AT1G54510.3 [+] show detail - NIMA-related serine/threonine kinase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Protein kinase, catalytic domain 41.305
Gene3D no description 6.8e-16
Gene3D no description 2.6e-45
HMMSmart Serine/threonine-protein kinase domain 3.3e-59
HMMSmart Tyrosine-protein kinase, catalytic domain 7.5e-11
HMMPanther NIMA-RELATED PROTEIN KINASE, NEK 8.4e-113
HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 8.4e-113
HMMPanther SERINE/THREONINE PROTEIN KINASE 1.4e-140
HMMPanther MAPKK-RELATED SERINE/THREONINE PROTEIN KINASE 1.4e-140
HMMPfam Serine/threonine-protein kinase-like domain 8.1e-60
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 7.1e-70

See the detailed result >

AT1G54510.3

Model type
Protein coding
Short Description
NIMA-related serine/threonine kinase 1
Curator Summary
Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.
Computational Description
NIMA-related serine/threonine kinase 1 (NEK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 2 (TAIR:AT3G04810.2).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-87-D23 introduced

  • F10751 - Specific phenotypes were NOT observed.
  • F12636 - Specific phenotypes were NOT observed.
  • F13035 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic / whole plant flowering stage::late
  • F24118 - Specific phenotypes were NOT observed.
  • F27050 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found