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  3. RAFL09-87-E13

RAFL09-87-E13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17881)

full reading [+] show sequence

Nucleotide sequence: RAFL09-87-E13 - full reading 
GACAATCACA TGGCCTTTTC AAAAAATCAA TCTTTTAGTT CTCTATCGAT 
GCGTAGGCTT GAAGCATGAT GACGACAGTC GCCGCCGATC TCCACCGTTA 
TCTTTTCCTG ATTACCGTTT TTCTTTTCTT CCTCTGCGAC AAAACCTCTC 
TTGCTCTGAC CACAGACGGT GTTCTTCTTC TCTCTTTCCG TTACTCAATC 
GTTGACGATC CTCTTTACGT TTTTCGGAGC TGGAGATTCG ACGACGAGAC 
TCCTTGCTCT TGGCGTGGTG TCACGTGCGA TGCATCTTCC CGGCACGTGA 
CTGTTCTGTC ACTTCCAAGC TCGAACCTTA CCGGCACACT ACCTTCAAAT 
TTGGGTTCAC TCAATTCACT TCAAAGACTT GATCTTTCCA ACAATTCCAT 
CAATGGGTCT TTCCCGGTTT CGCTTCTCAA CGCGACGGAG CTTCGATTTC 
TTGATCTGTC CGATAATCAC ATCTCCGGTG CACTACCGGC GAGTTTTGGC 
GCGCTTTCGA ACCTCCAAGT GTTGAATCTC TCCGATAATT CCTTCGTCGG 
CGAATTACCG AACACATTAG GATGGAACCG GAACTTAACG GAGATTTCAC 
TTCAGAAAAA CTATTTATCC GGCGGGATTC CGGGAGGTTT TAAGTCGACG 
GAGTATCTTG ATCTCTCGTC AAATTTGATC AAAGGCTCGT TGCCGTCACA 
TTTCAGAGGG AATCGTCTAC GCTATTTCAA CGCTTCGTAC AACAGAATCT 
CCGGCGAGAT TCCGTCAGGT TTCGCCGACG AAATCCCGGA AGACGCCACC 
GTTGATCTCT CATTCAACCA ACTTACAGGT CAAATCCCGG GTTTTCGGGT 
TCTCGATAAC CAAGAATCCA ACTCTTTCTC CGGTAACCCG GGTCTCTGCG 
GATCCGACCA TGCAAAACAC CCTTGTCGTG ACGGTGAAGC AACCTCTCCA 
CCTCCATCGC CGACTCCAAA TTCTCCTCCT GCATTAGCTG CTATACCAAA 
TACTATTGGC TTAACCAATC ACCCAATTAG CTCCAAAACC GGTCCGAAAT 
CAAAATGGGA TCATAAACCG GTGCTTATCA TTGGCATTGT TGTCGGTGAC 
TTAGCCGGTT TAGCAATCCT CGGGATTGTG TTTTTCTACA TTTACCAGTC 
GAGAAAACGG AAGACCGTAA CGGCTACGTC AAAATGGTCC ACGTCATCAA 
CAGATTCCAA GGTCTCAAAA TGGTACTGTT TACGCAAATC CGTTTACGTT 
GACGGTGACT GCGAAGAAGA AGAAGAGGAA TCTGAGACAT CGGAATCCGA 
ATCCGACGAA GAGAACCCGG TCGGACCAAA TCGACGGTCA GGATTAGACG 
ATCAAGAAAA AAAGGGAACG TTAGTGAATC TCGATTCAGA GAAAGAGCTT 
GAAATCGAAA CGCTTCTCAA AGCATCAGCT TATATTTTGG GAGCCACCGG 
TTCGAGCATA ATGTATAAAG CGGTGCTTCA AGACGGAACA GCTGTGGCGG 
TTCGACGAAT AGCTGAATGC GGTTTAGACC GGTTTAGAGA TTTCGAAGCT 
CAGGTTCGAG CCGTGGCTAA GTTAATACAT CCAAACCTGG TACGAATTCG 
CGGTTTCTAT TGGGGATCCG ACGAGAAACT TGTCATTTAC GATTTTGTCC 
CTAACGGCAG CCTCGCTAAC GCCCGTTACC GGAAAGTGGG CTCCTCTCCT 
TGTCATTTAC CTTGGGACGC TCGGCTCAAG ATAGCAAAAG GCATAGCTCG 
CGGGCTAACA TACGTACACG ACAAGAAGTA CGTGCATGGT AACCTCAAGC 
CTAGCAATAT CCTTTTGGGC TTAGATATGG AGCCTAAAGT TGCGGATTTC 
GGTCTTGAGA AGCTTTTGAT TGGGGACATG AGTTATAGAA CCGGTGGATC 
GGCTCCAATA TTCGGAAGCA AGAGATCCAC AACGTCTCTT GAGTTTGGGC 
CGAGTCCAAG CCCAAGTCCA AGTTCAGTCG GGTTACCCTA CAATGCTCCA 
GAATCTCTTC GGAGTATTAA GCCGAATTCG AAATGGGATG TGTACTCGTT 
CGGAGTTATT CTGCTTGAGC TACTAACGGG AAAGATCGTG GTGGTCGACG 
AGCTTGGACA GGTTAATGGG CTTGTGATTG ATGACGGTGA GCGGGCAATT 
CGGATGGCGG ACTCTGCTAT ACGGGCTGAG TTAGAAGGCA AAGAAGAAGC 
TGTGTTGGCA TGTTTGAAAA TGGGCCTAGC TTGTGCGTCT CCAATACCAC 
AGAGAAGGCC CAATATCAAA GAGGCTTTGC AAGTTCTCGA GAGATTCCCT 
GTTCATTCTA GTCAACAGTA ATGATAATAA TTAAGACCAA GAAAGAGTTA 
AATAACTTGA CTGTGTGTAC TTAGAGTTAG ATTGATAGGC AAGTTTGATC 
TTAAAAAAAA AA

Gene models with high sequence identity

  1. AT5G67280.1 [+] show detail - receptor-like kinase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Toll-like receptor, leucine rich repeat-containing 9.7e-05
FPrintScan Toll-like receptor, leucine rich repeat-containing 9.7e-05
ProfileScan Protein kinase, catalytic domain 27.665
superfamily L domain-like 4.9e-59
superfamily Protein kinase-like domain 1.1e-50
HMMPanther RECEPTOR-LIKE PROTEIN KINASE 3.8e-171
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.8e-171
HMMPfam Serine/threonine-protein kinase-like domain 1.8e-27
HMMPfam Leucine-rich repeat 0.054
HMMPfam Leucine-rich repeat 0.067
HMMPfam Leucine-rich repeat 0.1
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-10
HMMSmart Leucine-rich repeat, typical subtype 51
HMMSmart Leucine-rich repeat, typical subtype 100
HMMSmart Leucine-rich repeat, typical subtype 11
HMMSmart Serine/threonine-protein kinase domain 2.5e-11
HMMSmart Tyrosine-protein kinase, catalytic domain 3.9e-09
Gene3D no description 5.1e-57
Gene3D no description 6.5e-09
Gene3D no description 1.9e-35

See the detailed result >

AT5G67280.1

Model type
Protein coding
Short Description
receptor-like kinase
Computational Description
receptor-like kinase (RLK); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G37250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-87-E13 introduced

  • F17820 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found