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  3. RAFL09-87-G05

RAFL09-87-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09973)

full reading [+] show sequence

Nucleotide sequence: RAFL09-87-G05 - full reading 
TGACTGAAGC TGGTATGGTG ACCCACGCAT TATTACTGTG TTACATCGAG 
GACCGCTTTT TCAATTACTC AAGCATATAC TATTATGGAA TGGAAGACGA 
TGTGATGTAC CCTAGCTACA TGGTTATCTT GACGTCGCTA ATAGGATTGG 
CTGTGGTGAG AAGACTGTTT GCTGACCACC GAATTGGACA AAAGGCAGTC 
TGGATCTTGA CCTGTCTGTA TTCAGCAAAG TTGGCTATGC TCTTCCTATC 
ATCGAAATCA ATTGTATGGG TGTCTGCAGC TCTATTACTG GCTGTTTCCC 
CTCCCTTACT TCTATACAAA ATGTGCAGGG AGAAGTCGAA ATCTGCCTCT 
AAAATGAAGC CATGGCAAGG TTATGCTCAT GCCGTAGTGG TTGCTGTCTC 
TGTCTGGTTT TGCCGGGAAA CAATATTTGA TGCTCTACAG TGGTGGCATG 
GAAGACCTCC GTCTGATGGT TTGCTTCTTG GTTCCTGCAT CGTTTTAATT 
GGTCTGGCCT GTATACCAAT TGTTGCCTTC CACTTTTCGC ATGTCCTGTC 
AGCTAAGAGA AGCTTGGTAT TAGTAGTGGC AACTGGATGC ATGTTTATTC 
TGATGCAGCC ACCGATGCCT ATGACGTGGA GTTACCATTC AGATATGATC 
AAGGCCGCTC GCCAGTCAGC TGATGACATT TCCATCTATG GATTCATGGC 
ATCCAAACCG ACTTGGCCGT CTTGGTTGCT TATTGTGTCA CTCCTCTTGA 
TTCTTGCTGC TGCCACATCT CTTATCCCAA TCAAATACGT AGTAGAACTG 
AGAGCATTTT ACTCCATTGC CATGGGTTTA GCTCTCGGTG TTTATATATC 
AGCAGAGTTC TTTCTACAAG CTGCTGTTCT ACATGCCCTG ATCGTTGTAA 
CACTGGTGTG TGCCTCAGTT TTTGTCATCT TCACCCATTT TCCATCTGCC 
TCAAGCACAA AGCTGCTTCC CTGGGTGTTT GCTCTTCTCG TGGCTCTATT 
TCCTGTGACA TATTTGTTAG AAGGGCAAGT CAGAATTAAA AACGATCTCA 
ACGAAAATGT TACCTGGGGT TGGGACACAA GGGAGGAGGA TAAGAAAGTC 
ACAACCATGT TGGCCATTGA AGGTGCAAGA ACATCTCTTC TAGGTCTCTA 
TGCAGCGATA TTTATGCTTA TAGCTCTCCT GATTAAATTT GAGCTCACTT 
CGCTTTTGCG TGAGAAATTC TCTGAGAGGA GTGGTCAGTC AAAAACCCAA 
GGAGGCGCAA GAGGGATTTT CCCGACACGA ATGAGGTTGA TGCAGCAACG 
CCGAGCCACC TCGATCCAAA GCTTTGCAGT AGAGAAAATG TCAGAAGAGG 
GAGCAGCATG GATGCCTTCT GTTGGTAATG TCGCCACCAT CATGTGCTTT 
GCCATATGCT TAATCCTCAA CATCCACCTC TCAGGCGGCT CAAGCCAAGC 
GATATTCTTC CTGGCTCCAA TCTTACTTCT CCTGAACCAA GACTCTGATC 
TCTTATCCGG GTTTGGTGAT AAACAGAGAT ACTTCCCGGT TACAGTAGCC 
ATATCAACAT ATTTGGCATT ATCCTCGCTC TACACTGTAT GGGAAGAAGT 
TTGGTTTGGT GGAAACACAG GTTGGGGAGT CGAAATTGGA GGCCGTGAAT 
GGTTTTTTGC GGTGAAGAAC CTGGCTCTCC TAATACTCAC AGCACCAGGT 
CACATCATAT TCAACAGGTA CGTTTGGAGT TACACCACCA AACACACAGA 
CGCGTCGCCG ATGCTGACCG TGCCACTTAG CTTTGCAGCC GTAATAATAA 
CAGACGTGTT TCAAGTTAGG GTTCTGGGAG TTTTAGGCAT TGTTTACTCT 
GCGGCTCAGT ATGTGATATC TAGGCAACAA TATATGAAAG GGCTGAGGTA 
TATTTAGACA GTCGTAGGAT TGATTAGTAA TGTTTTCGAC CCTTTTTGTA 
ACAGAATTTG TGAAACAGTG TTTTCATTTC CCAGCTTTGT TTCTCAGTGG 
ATGCATTGGA AATTGCCAAT ATACGACGTT TGAACAACTT

Gene models with high sequence identity

  1. AT5G13390.1 [+] show detail - no exine formation 1
    E-value: 0; Score: 99.56

 

InterPro Scan Digest

See the detailed result >

AT5G13390.1

Model type
Protein coding
Short Description
no exine formation 1
Curator Summary
Required for normal pollen development and lipid accumulation within the tapetum
Computational Description
NO EXINE FORMATION 1 (NEF1); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-87-G05 introduced

  • F27913 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found