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RAFL09-87-G18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06911)

full reading [+] show sequence

Nucleotide sequence: RAFL09-87-G18 - full reading
ACTACACACG AATCATCAAA GTTGCACATA TATCACAATG GCAACTACAT 
CATTCTCATT ACCAAATCAT AAGTTCGGGA TCAAACTAAT GTTGTTCCTA
GTCTTGAACC TCTTGTCCCT TCAGACTTCA GTATTTGCCC ATTCATCAAA
CTCTAAATTC ACAAAAATCT CAAGACACCC AAACTCCGAT TCATCTTCGA
GAACCAAACC CTCAACTTCT TCCAACAAAG GGTTTCTCAG CTCAGTCCAA
CTCAGCTTGG ACCACGCTCT CTTTGCTCGT TCTCTCGCCT TTAATCTCAC
GCTTTCGCAC CGTACTTCTC AAACCCTCAT GCTAGATCCT GTCAACGACT
GCCTTGAGCT GCTTGACGAC ACCCTCGACA TGTTGTATCG CATCGTTGTC
ATCAAGCGTA AAGATCACGT CAATGATGAT GTACATACGT GGCTAAGCGC
GGCGTTGACT AATCAAGAGA CATGTAAGCA AAGCCTCAGT GAGAAATCTA
GCTTCAACAA AGAAGGAATT GCGATAGATT CTTTCGCAAG AAACCTCACC
GGTTTACTGA CCAATTCACT AGACATGTTC GTGTCTGATA AACAGAAGAG
TTCTTCTTCG TCTAATCTAA CTGGTGGCCG GAAACTGTTG TCCGATCATG
ATTTTCCGAC GTGGGTTTCT TCGTCAGACC GGAAGCTTTT AGAAGCTTCA
GTAGAAGAGC TGAGACCTCA CGCTGTGGTG GCAGCCGACG GAAGCGGGAC
TCACATGAGC GTAGCCGAAG CGTTGGCGTC TTTGGAGAAG GGAAGTGGCA
GAAGCGTAAT CCATTTAACA GCCGGAACCT ATAAAGAGAA TCTGAATATT
CCGAGCAAAC AGAAGAACGT TATGTTGGTC GGTGACGGGA AGGGCAAAAC
AGTCATTGTC GGTAGCAGAA GTAACAGAGG CGGCTGGAAT ACTTACCAAT
CCGCTACTGT CGCCGCCATG GGAGATGGAT TCATAGCTCG AGACATAACA
TTCGTGAACA GTGCCGGACC AAACTCGGAG CAAGCTGTAG CATTACGGGT
CGGATCAGAT AGGTCCGTGG TATACAGATG CTCAATAGAT GGGTACCAAG
ACTCACTCTA CACTCTCTCC AAACGACAGT TCTATAGAGA AACCGACATA
ACAGGCACCG TCGATTTCAT CTTCGGAAAC TCTGCCGTCG TTTTCCAAAG
CTGCAACCTC GTATCTCGTA AAGGCTCCTC GGACCAGAAC TACGTCACGG
CCCAAGGCCG GTCCGACCCG AACCAGAACA CCGGTATTTC TATCCATAAT
TGCAGAATAA CCGGTTCGAC CAAGACTTAC TTGGGTCGTC CATGGAAGCA
GTATTCGAGG ACTGTTGTGA TGCAATCGTT TATAGACGGC TCGATTCACC
CTTCGGGTTG GTCTCCTTGG TCGAGTAACT TTGCTTTGAA GACTCTTTAT
TACGGAGAAT TTGGGAATTC GGGTCCTGGA TCATCGGTGT CGGGTCGGGT
TAGTTGGGCC GGGTATCACC CGGCGTTGAC GTTGACTGAA GCTCAAGGGT
TTACTGTTTC GGGTTTCATT GACGGGAATT CTTGGTTGCC GTCAACAGGT
GTCGTTTTCG ACTCTGGCCT TTTATAATTT AAGTGACGTT TTAAATGAAT
TTTTACTCTG ATCATGATAT TCATATACTG CTTTAAATTG ATATTAACTA
ATCAATCATG TGGTAAAAAA AAAAAACGTA AATGTAATTA AATATAGTTG
TGTATTGCAT TTTGTGATTG GTTGTATACT CCTATCATAG TTGTAAATGT
TCTTGTCATG AATAAAAGTG TGAAAATTGG TATTGT

Gene models with high sequence identity

  1. AT3G59010.1 [+] show detail - pectin methylesterase 61
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Gene3D Pectin lyase fold 1.1e-114
superfamily Pectin lyase fold/virulence factor 1.4e-106
HMMSmart Pectinesterase inhibitor 1.5e-19
HMMPfam Pectinesterase, catalytic 2.2e-128
HMMPfam Pectinesterase inhibitor 9.6e-17
PatternScan Pectinesterase, active site 0

See the detailed result >

AT3G59010.1

Model type
Protein coding
Short Description
pectin methylesterase 61
Computational Description
pectin methylesterase 61 (PME61); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G43050.1); Has 2708 Blast hits to 2657 proteins in 324 species: Archae - 6; Bacteria - 591; Metazoa - 1; Fungi - 200; Plants - 1884; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-87-G18 introduced

  • F07432 - Specific phenotypes were NOT observed.
  • F08229 - seed::decreased length / seed::increased width
  • F15640 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found