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  3. RAFL09-87-G18

RAFL09-87-G18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06911)

full reading [+] show sequence

Nucleotide sequence: RAFL09-87-G18 - full reading 
ACTACACACG AATCATCAAA GTTGCACATA TATCACAATG GCAACTACAT 
CATTCTCATT ACCAAATCAT AAGTTCGGGA TCAAACTAAT GTTGTTCCTA 
GTCTTGAACC TCTTGTCCCT TCAGACTTCA GTATTTGCCC ATTCATCAAA 
CTCTAAATTC ACAAAAATCT CAAGACACCC AAACTCCGAT TCATCTTCGA 
GAACCAAACC CTCAACTTCT TCCAACAAAG GGTTTCTCAG CTCAGTCCAA 
CTCAGCTTGG ACCACGCTCT CTTTGCTCGT TCTCTCGCCT TTAATCTCAC 
GCTTTCGCAC CGTACTTCTC AAACCCTCAT GCTAGATCCT GTCAACGACT 
GCCTTGAGCT GCTTGACGAC ACCCTCGACA TGTTGTATCG CATCGTTGTC 
ATCAAGCGTA AAGATCACGT CAATGATGAT GTACATACGT GGCTAAGCGC 
GGCGTTGACT AATCAAGAGA CATGTAAGCA AAGCCTCAGT GAGAAATCTA 
GCTTCAACAA AGAAGGAATT GCGATAGATT CTTTCGCAAG AAACCTCACC 
GGTTTACTGA CCAATTCACT AGACATGTTC GTGTCTGATA AACAGAAGAG 
TTCTTCTTCG TCTAATCTAA CTGGTGGCCG GAAACTGTTG TCCGATCATG 
ATTTTCCGAC GTGGGTTTCT TCGTCAGACC GGAAGCTTTT AGAAGCTTCA 
GTAGAAGAGC TGAGACCTCA CGCTGTGGTG GCAGCCGACG GAAGCGGGAC 
TCACATGAGC GTAGCCGAAG CGTTGGCGTC TTTGGAGAAG GGAAGTGGCA 
GAAGCGTAAT CCATTTAACA GCCGGAACCT ATAAAGAGAA TCTGAATATT 
CCGAGCAAAC AGAAGAACGT TATGTTGGTC GGTGACGGGA AGGGCAAAAC 
AGTCATTGTC GGTAGCAGAA GTAACAGAGG CGGCTGGAAT ACTTACCAAT 
CCGCTACTGT CGCCGCCATG GGAGATGGAT TCATAGCTCG AGACATAACA 
TTCGTGAACA GTGCCGGACC AAACTCGGAG CAAGCTGTAG CATTACGGGT 
CGGATCAGAT AGGTCCGTGG TATACAGATG CTCAATAGAT GGGTACCAAG 
ACTCACTCTA CACTCTCTCC AAACGACAGT TCTATAGAGA AACCGACATA 
ACAGGCACCG TCGATTTCAT CTTCGGAAAC TCTGCCGTCG TTTTCCAAAG 
CTGCAACCTC GTATCTCGTA AAGGCTCCTC GGACCAGAAC TACGTCACGG 
CCCAAGGCCG GTCCGACCCG AACCAGAACA CCGGTATTTC TATCCATAAT 
TGCAGAATAA CCGGTTCGAC CAAGACTTAC TTGGGTCGTC CATGGAAGCA 
GTATTCGAGG ACTGTTGTGA TGCAATCGTT TATAGACGGC TCGATTCACC 
CTTCGGGTTG GTCTCCTTGG TCGAGTAACT TTGCTTTGAA GACTCTTTAT 
TACGGAGAAT TTGGGAATTC GGGTCCTGGA TCATCGGTGT CGGGTCGGGT 
TAGTTGGGCC GGGTATCACC CGGCGTTGAC GTTGACTGAA GCTCAAGGGT 
TTACTGTTTC GGGTTTCATT GACGGGAATT CTTGGTTGCC GTCAACAGGT 
GTCGTTTTCG ACTCTGGCCT TTTATAATTT AAGTGACGTT TTAAATGAAT 
TTTTACTCTG ATCATGATAT TCATATACTG CTTTAAATTG ATATTAACTA 
ATCAATCATG TGGTAAAAAA AAAAAACGTA AATGTAATTA AATATAGTTG 
TGTATTGCAT TTTGTGATTG GTTGTATACT CCTATCATAG TTGTAAATGT 
TCTTGTCATG AATAAAAGTG TGAAAATTGG TATTGT

Gene models with high sequence identity

  1. AT3G59010.1 [+] show detail - pectin methylesterase 61
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Gene3D Pectin lyase fold 1.1e-114
superfamily Pectin lyase fold/virulence factor 1.4e-106
HMMSmart Pectinesterase inhibitor 1.5e-19
HMMPfam Pectinesterase, catalytic 2.2e-128
HMMPfam Pectinesterase inhibitor 9.6e-17
PatternScan Pectinesterase, active site 0

See the detailed result >

AT3G59010.1

Model type
Protein coding
Short Description
pectin methylesterase 61
Computational Description
pectin methylesterase 61 (PME61); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G43050.1); Has 2708 Blast hits to 2657 proteins in 324 species: Archae - 6; Bacteria - 591; Metazoa - 1; Fungi - 200; Plants - 1884; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-87-G18 introduced

  • F07432 - Specific phenotypes were NOT observed.
  • F08229 - seed::decreased length / seed::increased width
  • F15640 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found