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  3. RAFL09-88-M11

RAFL09-88-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17891)

full reading [+] show sequence

Nucleotide sequence: RAFL09-88-M11 - full reading 
CCCGAGATAG ATAGAGAGAG AGATAAGGGA GGGTGAAAAA ATAAGCACAC 
ACCATTATCC ATCTGTTTTT TTTTTTCATC TCTCTCTCTC TCTTTTCTTC 
TTCGATTCGT GTTTTCTCCA TTTCATTCTC TGTTACGCTT CAATCGAACT 
CGGAAGTCAT GGCTATGGCC ACAAGGGTGT TGGCTCAATC GACTCCACCG 
TCTTTAGCTT GTTACCAGAG GAATGTTCCT TCACGTGGAT CTGGAAGATC 
GAGAAGATCG GTGAAAATGA TGTGTAGTCA GTTACAAGTG TCTGGTTTAA 
GAATGCAAGG GTTTATGGGA TTACGTGGTA ACAATGCTTT AGACACTCTT 
GGAAAAAGTC GTCAAGATTT TCATTCGAAG GTGCGACAGG CAATGAATGT 
GCCCAAGGGG AAAGCTAGCC GGTTTACGGT GAAAGCAATG TTTGAAAGAT 
TTACGGAGAA AGCTATCAAA GTTATTATGC TTGCTCAGGA GGAAGCTAGA 
AGACTAGGCC ACAATTTTGT GGGAACCGAA CAAATTCTTC TTGGTCTTAT 
TGGTGAGGGT ACTGGAATCG CTGCTAAAGT TTTGAAATCC ATGGGGATTA 
ACTTAAAAGA TGCACGTGTG GAGGTTGAGA AGATTATTGG AAGGGGAAGT 
GGCTTTGTTG CTGTTGAGAT CCCATTCACT CCTCGTGCCA AGCGTGTTCT 
TGAACTCTCT CTTGAGGAAG CTCGCCAACT TGGTCACAAT TACATTGGAT 
CCGAGCACCT TTTGCTTGGG TTGCTACGTG AAGGTGAAGG AGTTGCAGCT 
CGAGTCCTTG AGAATTTAGG TGCAGATCCT AGTAATATTC GCACTCAGGT 
GATACGCATG GTGGGTGAGA ACAATGAAGT AACTGCTAAT GTTGGGGGAG 
GAAGCAGCAG CAATAAGATG CCAACTCTTG AAGAGTACGG AACAAACTTG 
ACGAAACTGG CTGAGGAGGG TAAATTGGAC CCAGTTGTTG GAAGGCAGCC 
GCAGATAGAA CGTGTGGTGC AAATTCTTGG CAGGAGAACC AAGAACAACC 
CTTGTCTTAT TGGAGAACCT GGTGTTGGTA AGACAGCTAT TGCTGAAGGA 
CTTGCACAGC GTATTGCCAG TGGCGATGTC CCTGAAACTA TTGAAGGGAA 
GAAGGTTATA ACACTCGACA TGGGTCTTCT AGTTGCTGGA ACAAAATATC 
GTGGAGAGTT TGAAGAGAGA TTGAAAAAGC TTATGGAGGA AATTAGACAG 
AGCGATGAGA TAATCTTATT TATCGACGAA GTGCATACTT TGATTGGGGC 
TGGAGCAGCA GAAGGTGCAA TTGACGCAGC TAACATTTTA AAACCAGCTC 
TCGCTAGAGG TGAATTGCAG TGCATTGGAG CGACAACATT AGATGAATAC 
CGAAAGCACA TTGAGAAAGA CCCTGCCTTG GAAAGAAGAT TCCAGCCAGT 
GAAAGTACCT GAACCTACCG TGGATGAAAC TATTCAGATC CTTAAGGGTC 
TGCGAGAGCG ATATGAAATT CACCACAAGC TTCGTTACAC AGACGAATCT 
TTAGTAGCAG CTGCACAGTT GTCATACCAG TATATAAGTG ATCGTTTCCT 
TCCTGACAAG GCAATTGACT TGATTGATGA AGCTGGTTCT CGGGTTCGAC 
TTCGTCATGC ACAGGTCCCT GAGGAAGCTA GGGAGCTTGA GAAGGAGCTT 
AGGCAGATAA CAAAGGAGAA GAATGAAGCT GTCCGTGGCC AGGACTTTGA 
GAAGGCTGGG ACACTTCGGG ATAGAGAAAT TGAACTCAGA GCTGAGGTAT 
CTGCAATCCA AGCGAAAGGC AAGGAGATGA GCAAAGCAGA GAGTGAGACC 
GGTGAGGAAG GCCCTATGGT CACGGAGTCA GACATCCAAC ACATTGTGTC 
TTCATGGACT GGTATTCCTG TTGAGAAAGT ATCAACCGAT GAGTCTGACC 
GTCTCCTCAA GATGGAAGAA ACCCTCCACA AACGTATCAT AGGCCAAGAC 
GAAGCTGTGA AAGCCATAAG CCGAGCCATT CGCCGTGCAC GTGTTGGACT 
CAAGAATCCT AACCGTCCAA TCGCTAGTTT CATATTCTCG GGTCCAACCG 
GTGTTGGGAA ATCTGAGCTT GCCAAAGCTT TAGCAGCTTA CTACTTCGGT 
TCCGAAGAAG CCATGATTCG TCTAGATATG AGTGAGTTCA TGGAGAGGCA 
CACTGTCTCC AAACTCATCG GTTCACCTCC TGGATATGTC GGATACACCG 
AAGGAGGTCA GTTAACAGAA GCGGTTAGAC GTCGCCCTTA CACCGTCGTT 
CTATTCGATG AGATTGAAAA AGCCCATCCA GATGTTTTCA ACATGATGCT 
TCAAATCCTT GAAGATGGTA GATTAACAGA CAGCAAAGGA AGAACAGTTG 
ACTTCAAAAA CACACTTCTC ATCATGACAT CAAACGTCGG AAGCAGCGTG 
ATTGAGAAAG GAGGAAGACG TATCGGATTC GACTTAGACT ACGACGAGAA 
AGACAGCAGT TACAACAGAA TCAAGAGCCT TGTAACAGAG GAGCTGAAAC 
AATACTTCAG ACCCGAGTTC CTAAACAGGC TAGACGAGAT GATTGTGTTC 
AGACAGCTAA CAAAGCTGGA AGTGAAAGAA ATTGCTGACA TACTGTTGAA 
GGAAGTGTTC GAGAGGTTGA AGAAGAAAGA GATTGAGCTT CAGGTGACCG 
AAAGATTCAA AGAGAGAGTA GTAGACGAAG GTTATAACCC GAGCTATGGA 
GCAAGACCGT TGAGAAGAGC CATCATGAGG CTTTTAGAGG ATAGTATGGC 
AGAGAAGATG CTTGCGAGAG AGATCAAAGA AGGAGACTCG GTGATTGTGG 
ACGTTGACGC TGAAGGTAAC GTCACGGTGC TAAATGGTGG AAGTGGCACT 
CCAACTACTT CCTTGGAGGA GCAGGAAGAT TCTCTCCCTG TTGCTTAAAT 
AAAAAAAGCA AAGTGCGTGC GTTTCTCTCT TCTTTTGCTT TGGCCCTTAA 
ATGAATTATG GCAAGAGAAG GTTATGAATT GAGATACATG GGGGCTTTCT 
TAATATACAT TTTCTAAATA TATGAAAAAT GTAATGTATA GATGACATTG 
TGTAGCTTCT TTTTCTTCCA TGCTTTTTAA GGACTTGTCT TTGGTGCCCA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT5G50920.1 [+] show detail - CLPC homologue 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart ATPase, AAA+ type, core 0.00000000000012
HMMSmart ATPase, AAA+ type, core 0.00000000033
HMMPanther ATP-DEPENDENT CLP PROTEASE 0
HMMPanther ATP-DEPENDENT CLP PROTEASE 0
Gene3D no description 2.3e-83
Gene3D no description 2.8e-88
Gene3D no description 6.5e-25
PatternScan Chaperonin ClpA/B, conserved site 0
PatternScan Chaperonin clpA/B 0
FPrintScan Chaperonin clpA/B 2.9e-41
FPrintScan Chaperonin clpA/B 2.9e-41
FPrintScan Chaperonin clpA/B 2.9e-41
FPrintScan Chaperonin clpA/B 2.9e-41
Coil coiled-coil 0
Coil coiled-coil 0
ProfileScan UvrB/UvrC protein 11.45
superfamily P-loop containing nucleoside triphosphate hyd 2.2e-108
superfamily P-loop containing nucleoside triphosphate hyd 2.2e-85
superfamily Double Clp-N motif 1.4e-36
HMMPfam ATPase, AAA-2 7.6e-56
HMMPfam Clp, N-terminal 9.5e-18
HMMPfam Clp, N-terminal 2.3e-19
HMMPfam ATPase, AAA-type, core 0.0000000000000046
HMMPfam Clp ATPase, C-terminal 2e-24
HMMPfam UvrB/UvrC protein 0.00000015

See the detailed result >

AT5G50920.1

Model type
Protein coding
Short Description
CLPC homologue 1
Curator Summary
Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.
Computational Description
CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-88-M11 introduced

  • F25923 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found