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  3. RAFL09-88-M23

RAFL09-88-M23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09994)

full reading [+] show sequence

Nucleotide sequence: RAFL09-88-M23 - full reading 
GAAACTTTAT GCCAAACTAA ATTTATTCTC CTTGGCGTCT TGTTGTGTTA 
ATCCTCAAGC AAACGACCCG TTTCTGTCGC CAAGTCAACC CGACCCGACT 
TCGTTCCCAT CGGTTGATCG GCCGGGACCT GATTGCGTTT AGCCTCCCGA 
AATCTACGGG CAAAGTTGAT CCCTCTGGGT TTGTCATTTG ATATCCTCTT 
TTCCCGTACC GCGCGTTTAT GATTCTGATT ACGTTCTTGG TTGTTTGCGA 
TTGATCCGTT TAGGATTTTC TCTGAGTCCA TCGCTTATTG AATCGTCAAG 
GCTTTTTCTT GTTTGACTTT GGAATATCGA ATCTGCTCAA TACTCCACCA 
AATTATCAAA CTTGGTGTTC TTTGTTGCTC AATACTCCAC CAAATTATCA 
AAACTTGGAT GTTCTTTGTA GCTCAATTAC CAAATTAATA AGTTGCATTC 
TTCTTTGTTG CTTGTTAGCC TTTTCATCGA GTTTCGTTTC TGCGATACTA 
TTTTGTTTAG GATAGTATGG CTGAAAAGGA AGTGGTTTCT GCCTCAACTT 
TAGAATCTAA GATCACTGAG GATCATCATG ACATCTGGAT CCGAGGAGCG 
ATGGAAAAGA GCCGCTCCTC CAACATCAGT GTTCTGAAGG ATAGATTCAT 
AGCTGCTGAG GATTCTGCTC TAGTTTCCAA GGATGTTGCA CAAAAGGATA 
TTGAGATTCT CTTGAGACGA GTGAAAACTG CTACAGCTTT ATTGACTTAC 
CTGAAATCTA AAGCGACAAC TGTGGCTGCT GCCGATTTGG CCAATCTTTC 
ACTTGAAACT GACCAGCTCC AAGATACAAT AGACGAACAT GATGGGACTT 
ATGTCACTGA GATGCTTCAG CATGTAGAGA CCGTTACAGG CGTCATGGAG 
TCTCTGGCTA GGCGTGCTTT TATCGCCGAA TCAGAAGCCG CTATCGAGAA 
AGGAAAGGTT GTGCTAAGCC AAGAGGAAAT TCAAAGAAAG GTTGGCCAAC 
TCGAGAACAT GTCCGTGAAG TTAGAGGACA TGGAAAAGTT TGCTCTTGGG 
ACCAGTAGTA TTCTCTGTGA AATGCGGCAG AGGGTTGATG ATTTGGTTGA 
AGAGACCTCT AGACAGAAGC AAAGAGCTAC TGAAAATGAG CTGGAACTCA 
GTCGCGTCAG GAGAGACTTT GAGTCTCTTA AATCGTATGT TACAAGTCTC 
ATTAGCGTCA GAGAAACTCT CGTCTCATCC GAGAAGCAGT TCCAAACAAT 
CGAGAGGCTT TTTGAACGGC TTGTTGCAAA GACAACGCAG TTGGAAAGCG 
AGAAAGTGCA GAAAGAAGCA GAGGTTCAGA AACTAATGGA AGAGAATGTA 
AGACTGACGG CTCTTGTGGA TAAGAAAGAG GCACAGCTTC TGGCCATGAA 
TGAGCAGTGC AAAATGATGG CCCTAAGCTC TATATGATGC TTAGAGATGA 
ATATTGCTCT ACTTAATCTT TCTTCCACTT GTAACATAAA GAAACTCTTA 
TTTGATACAA CTTCCATGTT TGTTGATATC CTAAAGGCAA CAAAATATTT 
GTCCTGGAAG ACTCTGTATG TGATTGTACA TTCTTAGCAC ATGAAATTGC 
GTTATTGTTT GGCTTAAAAA G

Gene models with high sequence identity

  1. AT5G66250.2 [+] show detail - kinectin-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT5G66250.2

Model type
Protein coding
Short Description
kinectin-related
Computational Description
kinectin-related; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17990.1); Has 3697 Blast hits to 3222 proteins in 449 species: Archae - 76; Bacteria - 383; Metazoa - 2011; Fungi - 286; Plants - 250; Viruses - 24; Other Eukaryotes - 667 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-88-M23 introduced

  • F16733 - Specific phenotypes were NOT observed.
  • F22347 - Specific phenotypes were NOT observed.
  • F28126 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found