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  3. RAFL09-89-B19

RAFL09-89-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17893)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-B19 - full reading 
GAAAGTAAAA ACAAAAGGAG AGCAATGGAC TCTGTTTCTT CTTCTTCCTT 
CCTCTCCTCC ACATTCTCTC TTCATCACTC TCTTCTTCGC CGCCGATCTT 
CCTCTCCTAC TCTCCTCCGT ATCAACTCCG CCGTCGTCGA AGAACGTTCT 
CCAATCACAA ACCCAAGCGA CAACAATGAT CGTCGTAACA AACCCAAAAC 
ACTCCACAAC CGAACCAATC ACACCTTAGT CTCATCACCA CCGAAACTCC 
GACCAGAAAT GACTCTCGCA ACAGCTCTCT TCACCACCGT CGAAGATGTA 
ATCAACACGT TCATCGATCC ACCTTCACGT CCTTCCGTTG ATCCAAAACA 
TGTCCTCTCT GATAACTTCG CTCCTGTCCT CGACGAGCTT CCTCCAACAG 
ACTGTGAAAT CATCCACGGC ACTCTTCCAC TGTCACTTAA CGGCGCTTAC 
ATCCGTAACG GTCCAAATCC ACAGTTTCTC CCTCGTGGTC CTTACCATCT 
CTTCGACGGC GACGGTATGC TTCACGCCAT AAAAATCCAC AACGGTAAAG 
CCACTCTCTG TAGCAGATAC GTCAAGACTT ATAAATACAA CGTCGAGAAA 
CAAACCGGAG CTCCGGTTAT GCCTAACGTG TTTTCCGGAT TCAACGGTGT 
AACGGCGTCA GTAGCTCGTG GAGCTTTAAC GGCAGCTAGG GTTTTAACCG 
GACAGTATAA TCCGGTTAAC GGCATTGGTT TAGCTAATAC AAGTCTAGCT 
TTCTTCAGTA ACCGTCTCTT TGCTTTAGGT GAATCTGATT TACCCTACGC 
CGTCCGATTA ACCGAATCAG GAGATATTGA AACGATCGGA CGGTACGATT 
TCGACGGGAA ATTAGCGATG AGTATGACAG CTCATCCTAA AACCGATCCA 
ATAACCGGAG AAACTTTCGC TTTCCGGTAC GGTCCGGTTC CACCGTTTTT 
AACATATTTC CGGTTTGATT CCGCCGGGAA AAAACAAAGA GACGTTCCGA 
TATTCTCGAT GACGTCTCCG TCGTTTCTCC ATGACTTCGC GATCACGAAA 
CGTCACGCGA TTTTCGCAGA GATTCAGCTT GGCATGAGGA TGAACATGTT 
GGATTTGGTT CTCGAAGGTG GTTCTCCGGT TGGTACTGAT AACGGAAAAA 
CTCCAAGGCT TGGAGTGATT CCTAAGTACG CCGGAGATGA GTCGGAGATG 
AAATGGTTCG AAGTTCCTGG ATTCAATATC ATTCACGCTA TTAATGCTTG 
GGATGAAGAT GATGGAAACA GCGTCGTTTT GATTGCACCG AATATTATGT 
CGATTGAACA TACTTTAGAG AGGATGGATC TGGTTCATGC TTTGGTGGAG 
AAGGTGAAGA TCGATCTCGT CACCGGGATT GTGAGACGTC ATCCGATCTC 
AGCGAGGAAT CTCGATTTCG CTGTGATTAA TCCGGCGTTT CTCGGGAGAT 
GTAGCAGGTA CGTTTACGCG GCGATTGGAG ATCCGATGCC GAAGATCTCC 
GGTGTGGTGA AGCTTGATGT GTCTAAAGGA GATCGGGATG ATTGTACGGT 
GGCCCGTAGA ATGTACGGTT CAGGTTGTTA CGGCGGAGAA CCGTTTTTCG 
TAGCTAGGGA TCCTGGTAAT CCGGAGGCGG AGGAGGATGA TGGTTATGTG 
GTGACGTATG TTCACGATGA AGTGACTGGA GAATCGAAGT TTCTGGTGAT 
GGACGCTAAA TCGCCGGAGC TTGAAATCGT CGCCGCCGTG AGGTTGCCGC 
GAAGGGTTCC GTACGGATTC CATGGGTTAT TTGTCAAGGA AAGTGACCTT 
AATAAGCTTT AACAATATAG GTAACTGCAA TAGTTAATAG AATAATTAAG 
TCTTAATTAC GTCCCGTACA ACAAATCGCA TAGTGTTGTT GCACACTTGC 
ACTTTATACA TTAAACTAAA GTACACATAG TTTGGTGGTG GTCGATGTAT 
ATAAAACATA CCAAAGCTTA TGAATATTAT TTTTTTCTTC TAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT4G19170.1 [+] show detail - nine-cis-epoxycarotenoid dioxygenase 4
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPanther 9-CIS-EPOXYCAROTENOID DIOXYGENASE 7.6e-192
HMMPanther Carotenoid oxygenase 7.6e-192
HMMPfam Carotenoid oxygenase 5.3e-125

See the detailed result >

AT4G19170.1

Model type
Protein coding
Short Description
nine-cis-epoxycarotenoid dioxygenase 4
Curator Summary
chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase
Computational Description
nine-cis-epoxycarotenoid dioxygenase 4 (NCED4); LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 5 (TAIR:AT1G30100.1); Has 2918 Blast hits to 2864 proteins in 491 species: Archae - 16; Bacteria - 796; Metazoa - 323; Fungi - 173; Plants - 887; Viruses - 0; Other Eukaryotes - 723 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-B19 introduced

  • F02314 - Specific phenotypes were NOT observed.
  • F29711 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found