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RAFL09-89-F19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17895)

full reading [+] show sequence

Nucleotide sequence: RAFL09-89-F19 - full reading 
GATTACAAAC AACTTACAGA ACTATTCTAA CTCTCTTACG GAAGAAGAAT 
CAAAGAGAAT CAGATTAGAG TGTGAGTTTT TAGAAGTTAC TAAATGGAGG 
GTAAAGGACG AGTTGGCTCA TCTTCTTCTA CTTCTTCTTC TTTTACAGCC 
GAACTCTTCG GTTCCAAAGA TCCTTCGCCA CCATCTTCAT CCTCCGGCAT 
CTTCTCCACC ATGTTCCCTC ATCCCTCCAA GGGTTCTGCA AGAGATGGTT 
CAAACTCCAA ACATGGCTCA CAAGCTCAAC GTAGAGAATC TTTAAATGCT 
CAAGAAGACA GAGTTGAGCC ATGTCATCTA AGCTCTTCTC TTTACTACGG 
TGGTCAAGAC GTATACGCTC GATCCACCAC CAACCAAACT TACCCTCCAG 
TTAAAAATGA CCGTAGAAGA AGCGGAGAAG ACGACGCTAA TGGACAGAAC 
CCGCAAGATG TTTCAAGAGG AAACTGGTGG CAAGGTTCTC TTTATTACTA 
AAGAACCACT TCCTTTAGTT TCTTTGTAAA TCTCTCCAGG AACACCTGAA 
GCTCAAGCCA AGTACTAATA TCTACTTAAC CAAGACTTTG TATAAATAAG 
TTTATGCAGA AAAAAAAAGT TATTAGGAGA TTTCTAGGTT AAGTAATAAT 
ATCGAAGAAT TCTCCTAGTA GTAGTGTCTT AAATAGATTT CTCTAGTACT 
TGTTATAATC AACTGTAACA ATATTTACTC TGTTTTTCTC TGTCTCGTGC 
CAACAAAGTG ATGAAATCAT TAGCCTTTTT TACCATAAAA A

Gene models with high sequence identity

  1. AT5G59080.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative str...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G59080.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-89-F19 introduced

  • F04031 - Specific phenotypes were NOT observed.
  • F12517 - Specific phenotypes were NOT observed.
  • F29540 - rosette leaf::decreased size / rosette leaf::abnormal / whole plant::decreased height / rosette leaf::decreased size / rosette leaf::abnormal / stem::decreased thickness

Mutant lines with disrupted or induced

4 mutant lines found